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Add causal_selection/meta_learner/trainer.py
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"""
Meta-learner: trains models to predict algorithm performance from dataset meta-features.
Supports multi-output regression (predict SHD per algorithm) and ranking evaluation.
"""
import os
import numpy as np
import pandas as pd
import json
import logging
from collections import defaultdict
from sklearn.ensemble import RandomForestRegressor, GradientBoostingRegressor
from sklearn.multioutput import MultiOutputRegressor
from sklearn.preprocessing import StandardScaler
from sklearn.model_selection import LeaveOneGroupOut, cross_val_predict
from sklearn.metrics import mean_squared_error, mean_absolute_error
import joblib
from causal_selection.features.extractor import FEATURE_NAMES
from causal_selection.discovery.algorithms import ALGORITHM_POOL
logger = logging.getLogger(__name__)
ALGO_NAMES = list(ALGORITHM_POOL.keys())
RESULTS_DIR = '/app/causal_selection/data/results'
MODEL_DIR = '/app/causal_selection/models'
def load_meta_dataset(results_dir=RESULTS_DIR):
"""Load meta-dataset from CSV files."""
X = pd.read_csv(os.path.join(results_dir, 'meta_features.csv'))
Y_shd = pd.read_csv(os.path.join(results_dir, 'shd_matrix.csv'))
Y_nshd = pd.read_csv(os.path.join(results_dir, 'normalized_shd_matrix.csv'))
configs = pd.read_csv(os.path.join(results_dir, 'configs.csv'))
return X, Y_shd, Y_nshd, configs
def train_meta_learner(X, Y, model_type='rf', **model_kwargs):
"""Train a multi-output regression model.
Args:
X: feature matrix (n_tasks, n_features)
Y: target matrix (n_tasks, n_algorithms) - SHD values
model_type: 'rf' or 'gbm'
Returns:
trained model, scaler
"""
scaler = StandardScaler()
X_scaled = scaler.fit_transform(X)
if model_type == 'rf':
base = RandomForestRegressor(
n_estimators=model_kwargs.get('n_estimators', 200),
max_depth=model_kwargs.get('max_depth', None),
min_samples_leaf=model_kwargs.get('min_samples_leaf', 2),
random_state=42,
n_jobs=-1,
)
elif model_type == 'gbm':
base = GradientBoostingRegressor(
n_estimators=model_kwargs.get('n_estimators', 200),
max_depth=model_kwargs.get('max_depth', 5),
learning_rate=model_kwargs.get('learning_rate', 0.1),
min_samples_leaf=model_kwargs.get('min_samples_leaf', 3),
random_state=42,
)
else:
raise ValueError(f"Unknown model type: {model_type}")
model = MultiOutputRegressor(base)
model.fit(X_scaled, Y)
return model, scaler
def predict_top_k(model, scaler, X_new, k=3):
"""Predict top-k algorithms for new dataset(s).
Args:
model: trained multi-output model
scaler: fitted StandardScaler
X_new: feature matrix (n_new, n_features)
k: number of top algorithms to return
Returns:
top_k_indices: (n_new, k) array of algorithm indices (sorted by predicted SHD ascending)
predicted_shd: (n_new, n_algorithms) full predicted SHD matrix
"""
X_scaled = scaler.transform(X_new)
predicted = model.predict(X_scaled)
if predicted.ndim == 1:
predicted = predicted.reshape(1, -1)
top_k_indices = np.argsort(predicted, axis=1)[:, :k]
return top_k_indices, predicted
def evaluate_lono_cv(X, Y, configs, model_type='rf', k=3, **model_kwargs):
"""Leave-One-Network-Out Cross-Validation.
For each network, train on all other networks, test on that network.
This tests generalization to truly unseen graph structures.
Returns:
results: dict with metrics per network and overall
"""
networks = configs['network'].values
unique_networks = sorted(configs['network'].unique())
results = {
'per_network': {},
'all_predictions': [],
'all_true': [],
'all_configs': [],
}
scaler = StandardScaler()
for test_net in unique_networks:
test_mask = networks == test_net
train_mask = ~test_mask
if train_mask.sum() < 3:
logger.warning(f"Skipping {test_net}: only {train_mask.sum()} training samples")
continue
X_train = X.values[train_mask]
Y_train = Y.values[train_mask]
X_test = X.values[test_mask]
Y_test = Y.values[test_mask]
# Scale
scaler.fit(X_train)
X_train_s = scaler.transform(X_train)
X_test_s = scaler.transform(X_test)
# Train
if model_type == 'rf':
base = RandomForestRegressor(
n_estimators=model_kwargs.get('n_estimators', 200),
max_depth=model_kwargs.get('max_depth', None),
min_samples_leaf=model_kwargs.get('min_samples_leaf', 2),
random_state=42, n_jobs=-1,
)
else:
base = GradientBoostingRegressor(
n_estimators=model_kwargs.get('n_estimators', 200),
max_depth=model_kwargs.get('max_depth', 5),
learning_rate=model_kwargs.get('learning_rate', 0.1),
min_samples_leaf=model_kwargs.get('min_samples_leaf', 3),
random_state=42,
)
model = MultiOutputRegressor(base)
model.fit(X_train_s, Y_train)
# Predict
Y_pred = model.predict(X_test_s)
# Evaluate
net_metrics = _compute_ranking_metrics(Y_pred, Y_test, k=k)
net_metrics['n_test'] = int(test_mask.sum())
net_metrics['n_train'] = int(train_mask.sum())
results['per_network'][test_net] = net_metrics
results['all_predictions'].extend(Y_pred.tolist())
results['all_true'].extend(Y_test.tolist())
results['all_configs'].extend(
configs[test_mask][['network', 'n_samples', 'seed']].to_dict('records')
)
logger.info(f" {test_net:15s}: top{k}_hit={net_metrics['top_k_hit_rate']:.3f} "
f"regret={net_metrics['mean_regret']:.2f} "
f"ndcg={net_metrics['ndcg_at_k']:.3f}")
# Overall metrics
all_pred = np.array(results['all_predictions'])
all_true = np.array(results['all_true'])
overall = _compute_ranking_metrics(all_pred, all_true, k=k)
results['overall'] = overall
return results
def _compute_ranking_metrics(Y_pred, Y_true, k=3):
"""Compute ranking metrics for algorithm selection.
Args:
Y_pred: (n, n_algos) predicted SHD values
Y_true: (n, n_algos) true SHD values
k: top-k to consider
"""
n = Y_pred.shape[0]
top_k_hits = 0
regrets = []
ndcgs = []
for i in range(n):
true_ranking = np.argsort(Y_true[i]) # best algo first
pred_ranking = np.argsort(Y_pred[i]) # predicted best first
true_best = true_ranking[0]
pred_top_k = pred_ranking[:k]
# Top-k hit rate: is the true best in predicted top-k?
if true_best in pred_top_k:
top_k_hits += 1
# SHD regret: SHD of best in predicted top-k minus oracle best SHD
oracle_shd = Y_true[i, true_best]
selected_shds = [Y_true[i, j] for j in pred_top_k]
best_selected_shd = min(selected_shds)
regret = best_selected_shd - oracle_shd
regrets.append(regret)
# NDCG@k
ndcg = _ndcg_at_k(Y_true[i], Y_pred[i], k)
ndcgs.append(ndcg)
# Also compute: is one of the true top-3 in the predicted top-3?
top_k_overlap = 0
for i in range(n):
true_top_k = set(np.argsort(Y_true[i])[:k])
pred_top_k = set(np.argsort(Y_pred[i])[:k])
overlap = len(true_top_k & pred_top_k)
top_k_overlap += overlap / k
return {
'top_k_hit_rate': top_k_hits / n, # true best in predicted top-k
'top_k_overlap_rate': top_k_overlap / n, # avg overlap between true/pred top-k
'mean_regret': np.mean(regrets),
'median_regret': np.median(regrets),
'max_regret': np.max(regrets),
'ndcg_at_k': np.mean(ndcgs),
'mean_pred_mse': mean_squared_error(Y_true, Y_pred),
'mean_pred_mae': mean_absolute_error(Y_true, Y_pred),
}
def _ndcg_at_k(true_scores, pred_scores, k):
"""Normalized Discounted Cumulative Gain at k.
For algorithm selection: lower SHD = better, so we negate scores for ranking.
"""
# Convert SHD to relevance: rel = max_shd - shd (higher = better)
max_shd = max(true_scores.max(), 1)
relevance = max_shd - true_scores
# Predicted ranking
pred_order = np.argsort(pred_scores)[:k]
# DCG
dcg = 0
for rank, idx in enumerate(pred_order):
dcg += relevance[idx] / np.log2(rank + 2)
# Ideal DCG
ideal_order = np.argsort(-relevance)[:k]
idcg = 0
for rank, idx in enumerate(ideal_order):
idcg += relevance[idx] / np.log2(rank + 2)
return dcg / idcg if idcg > 0 else 0
def get_feature_importance(model, feature_names=FEATURE_NAMES, algo_names=ALGO_NAMES):
"""Extract feature importance from trained model."""
importances = {}
for i, (algo, estimator) in enumerate(zip(algo_names, model.estimators_)):
if hasattr(estimator, 'feature_importances_'):
importances[algo] = dict(zip(feature_names, estimator.feature_importances_))
# Average importance across algorithms
avg_importance = defaultdict(float)
for algo, imp in importances.items():
for feat, val in imp.items():
avg_importance[feat] += val / len(importances)
return dict(avg_importance), importances
def save_model(model, scaler, model_dir=MODEL_DIR):
"""Save trained model and scaler."""
os.makedirs(model_dir, exist_ok=True)
joblib.dump(model, os.path.join(model_dir, 'meta_learner.pkl'))
joblib.dump(scaler, os.path.join(model_dir, 'scaler.pkl'))
logger.info(f"Model saved to {model_dir}")
def load_model(model_dir=MODEL_DIR):
"""Load trained model and scaler."""
model = joblib.load(os.path.join(model_dir, 'meta_learner.pkl'))
scaler = joblib.load(os.path.join(model_dir, 'scaler.pkl'))
return model, scaler
if __name__ == '__main__':
logging.basicConfig(level=logging.INFO, format='%(asctime)s %(levelname)s %(message)s')
# Load meta-dataset
X, Y_shd, Y_nshd, configs = load_meta_dataset()
print(f"Meta-dataset: X={X.shape}, Y_shd={Y_shd.shape}")
print(f"Networks: {configs['network'].unique()}")
print(f"Configs per network:")
print(configs['network'].value_counts().to_string())
# Evaluate with LONO-CV
print("\n" + "=" * 80)
print("LEAVE-ONE-NETWORK-OUT CV (RandomForest)")
print("=" * 80)
results_rf = evaluate_lono_cv(X, Y_nshd, configs, model_type='rf', k=3)
print(f"\nOverall Results (RF):")
for k, v in results_rf['overall'].items():
print(f" {k:25s}: {v:.4f}")
print("\n" + "=" * 80)
print("LEAVE-ONE-NETWORK-OUT CV (GradientBoosting)")
print("=" * 80)
results_gbm = evaluate_lono_cv(X, Y_nshd, configs, model_type='gbm', k=3)
print(f"\nOverall Results (GBM):")
for k, v in results_gbm['overall'].items():
print(f" {k:25s}: {v:.4f}")
# Train final model on all data
print("\n" + "=" * 80)
print("TRAINING FINAL MODEL")
print("=" * 80)
best_type = 'rf' if results_rf['overall']['top_k_hit_rate'] >= results_gbm['overall']['top_k_hit_rate'] else 'gbm'
print(f"Selected model type: {best_type}")
model, scaler = train_meta_learner(X, Y_nshd, model_type=best_type)
save_model(model, scaler)
# Feature importance
avg_imp, per_algo_imp = get_feature_importance(model)
print("\nTop 10 Most Important Features:")
for feat, imp in sorted(avg_imp.items(), key=lambda x: -x[1])[:10]:
print(f" {feat:30s}: {imp:.4f}")
# Save all evaluation results
with open(os.path.join(RESULTS_DIR, 'evaluation_results.json'), 'w') as f:
json.dump({
'rf': {k: v for k, v in results_rf['overall'].items()},
'gbm': {k: v for k, v in results_gbm['overall'].items()},
'feature_importance': avg_imp,
'selected_model': best_type,
}, f, indent=2)