| { |
| "attention_backend": "sdpa", |
| "backbone_compute_dtype": "bfloat16", |
| "backbone_snapshot": "/workspace/artifacts/esmfold2-small/standard300", |
| "chunk_size": 32, |
| "confidence_head_enabled": false, |
| "config": { |
| "_name_or_path": "artifacts/esmfold2-small/fold300", |
| "architectures": [ |
| "ESMFold2ExperimentalModel" |
| ], |
| "attn_backend": "sdpa", |
| "attn_implementation": "sdpa", |
| "chunk_size_feed_forward": 0, |
| "classifier_dropout": 0.2, |
| "classifier_hidden_size": 4096, |
| "classifier_pooling_types": [ |
| "mean" |
| ], |
| "classifier_probe_dropout": 0.1, |
| "classifier_probe_hidden_size": 512, |
| "classifier_probe_num_heads": 4, |
| "classifier_train_scope": "probe", |
| "confidence_head": { |
| "distogram_bins": 128, |
| "enabled": false, |
| "folding_trunk": { |
| "dropout": 0.25, |
| "n_heads": 8, |
| "n_layers": 4 |
| }, |
| "max_dist": 52.0, |
| "min_dist": 2.0, |
| "num_pae_bins": 64, |
| "num_pde_bins": 64, |
| "num_plddt_bins": 50 |
| }, |
| "d_pair": 256, |
| "d_single": 384, |
| "disable_msa_features": true, |
| "dtype": "float32", |
| "esmc_attn_backend": "sdpa", |
| "esmc_id": "Synthyra/ESMplusplus_small", |
| "esmc_precision": "bf16", |
| "folding_trunk": { |
| "dropout": 0.25, |
| "n_heads": 8, |
| "n_layers": 24 |
| }, |
| "force_lm_dropout_during_inference": false, |
| "id2label": { |
| "0": "LABEL_0", |
| "1": "LABEL_1" |
| }, |
| "inputs": { |
| "atom_encoder": { |
| "d_atom": 128, |
| "d_token": 768, |
| "expansion_ratio": 2, |
| "n_blocks": 3, |
| "n_heads": 4, |
| "n_spatial_rope_pairs_per_axis": 2, |
| "n_uid_rope_pairs": 10, |
| "spatial_rope_base_frequency": 20.0, |
| "swa_window_size": 128, |
| "uid_rope_base_frequency": 10000.0 |
| }, |
| "d_inputs": 451 |
| }, |
| "is_encoder_decoder": false, |
| "label2id": { |
| "LABEL_0": 0, |
| "LABEL_1": 1 |
| }, |
| "lm_d_model": 960, |
| "lm_dropout": 0.0, |
| "lm_encoder": { |
| "enabled": true, |
| "lm_dropout": 0.25, |
| "n_layers": 4, |
| "per_loop_lm_dropout": true |
| }, |
| "lm_mask_pct": 0.0, |
| "lm_num_layers": 30, |
| "model_type": "esmfold2", |
| "msa_conditioning": false, |
| "msa_encoder": { |
| "d_hidden": 32, |
| "d_msa": 128, |
| "enabled": false, |
| "msa_head_width": 32, |
| "n_heads_msa": 8, |
| "n_layers": 4 |
| }, |
| "msa_encoder_overwrite": true, |
| "n_relative_chain_bins": 2, |
| "n_relative_residx_bins": 32, |
| "num_diffusion_samples": 16, |
| "num_loops": 3, |
| "output_attentions": false, |
| "output_hidden_states": false, |
| "parcae": { |
| "coda_n_layers": 2, |
| "enabled": true, |
| "max_steps": 6, |
| "min_steps": 1, |
| "poisson_mean": 3.0 |
| }, |
| "problem_type": null, |
| "return_dict": true, |
| "structure_head": { |
| "diffusion_module": { |
| "atom_num_blocks": 3, |
| "atom_num_heads": 4, |
| "c_atom": 128, |
| "c_s_inputs": 451, |
| "c_token": 768, |
| "c_z": 256, |
| "fourier_dim": 256, |
| "relpos_r_max": 32, |
| "relpos_s_max": 2, |
| "sigma_data": 16.0, |
| "token_num_blocks": 12, |
| "token_num_heads": 16, |
| "transition_multiplier": 2 |
| }, |
| "distogram_bins": 128, |
| "gamma_0": 0.605, |
| "gamma_min": 1.107, |
| "inference_num_steps": 15, |
| "inference_p": 8.0, |
| "inference_s_max": 160.0, |
| "inference_s_min": 0.0004, |
| "noise_scale": 0.901, |
| "step_scale": 1.638, |
| "train_noise_log_mean": -1.2, |
| "train_noise_log_std": 1.5 |
| }, |
| "transformers_version": "5.13.0", |
| "type": "experimental" |
| }, |
| "environment": { |
| "cuda_runtime": "13.0", |
| "cuda_total_memory": 8585216000, |
| "gpu": "NVIDIA GeForce RTX 4070 Laptop GPU", |
| "gpu_capability": [ |
| 8, |
| 9 |
| ], |
| "peak_memory_allocated": 1438637056, |
| "python": "3.12.14", |
| "torch": "2.13.0+cu130", |
| "transformers": "5.13.0" |
| }, |
| "fold_snapshot": "/workspace/artifacts/esmfold2-small/fold300", |
| "folding_parameter_dtype": "float32", |
| "model_id": "esmfold2-300", |
| "num_diffusion_samples": 1, |
| "num_loops": 3, |
| "num_sampling_steps": 15, |
| "producer": "candidate", |
| "schema_version": 1, |
| "seed": 17, |
| "sequence": "MQYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE", |
| "source_files": { |
| "backbone": [ |
| { |
| "path": ".cache/huggingface/.gitignore", |
| "size_bytes": 1 |
| }, |
| { |
| "path": ".cache/huggingface/CACHEDIR.TAG", |
| "size_bytes": 195 |
| }, |
| { |
| "path": ".cache/huggingface/download/config.json.metadata", |
| "size_bytes": 104 |
| }, |
| { |
| "path": ".cache/huggingface/download/model.safetensors.metadata", |
| "size_bytes": 128 |
| }, |
| { |
| "path": ".cache/huggingface/trees/46c5f7d562e47d4c14165b424c71ab7db008e6fb.json", |
| "size_bytes": 1528 |
| }, |
| { |
| "path": "config.json", |
| "size_bytes": 746 |
| }, |
| { |
| "path": "model.safetensors", |
| "size_bytes": 1332022944 |
| } |
| ], |
| "fold": [ |
| { |
| "path": ".cache/huggingface/.gitignore", |
| "size_bytes": 1 |
| }, |
| { |
| "path": ".cache/huggingface/CACHEDIR.TAG", |
| "size_bytes": 195 |
| }, |
| { |
| "path": ".cache/huggingface/download/README.md.metadata", |
| "size_bytes": 103 |
| }, |
| { |
| "path": ".cache/huggingface/download/config.json.metadata", |
| "size_bytes": 104 |
| }, |
| { |
| "path": ".cache/huggingface/download/model.safetensors.metadata", |
| "size_bytes": 128 |
| }, |
| { |
| "path": ".cache/huggingface/trees/21531e59002c9205284715e28ee802dafb430637.json", |
| "size_bytes": 659 |
| }, |
| { |
| "path": "README.md", |
| "size_bytes": 810 |
| }, |
| { |
| "path": "config.json", |
| "size_bytes": 2090 |
| }, |
| { |
| "path": "model.safetensors", |
| "size_bytes": 684606540 |
| } |
| ] |
| }, |
| "state_identity": { |
| "backbone": { |
| "sha256": "540867d48827f928d54e24efa42e3eb862a7e87c2efbad8f44b3f7bef854aa4d", |
| "tensor_count": 302 |
| }, |
| "fold": { |
| "sha256": "c0041b7d1814fbfc114bb08dce0ce8d0e32a24751ee39da60903976c899426d0", |
| "tensor_count": 820 |
| } |
| }, |
| "tensor_hashes": { |
| "feature__asym_id": "4384f666de6068cb79824519e4ee61147fae5d20ef57128fd6868b26dc9bc9dc", |
| "feature__atom_attention_mask": "ffcb8e7cdbac0c7d728416672f665bc6d49144d6e89bd98cf8f9d1759f01db34", |
| "feature__atom_to_token": "77b3a276db54f29e16c4cd55cd7f01d945bcf01da3fc6d963ba0e0bf8a02a172", |
| "feature__deletion_mean": "d715dd7ffcd2dad4d3f61c85661d981c7ad6bb708e8d5c2b1a61b4e6e5c3762a", |
| "feature__deletion_value": "357234216320438b45b29ebdc9f39702600dc06291a9aff46d48f598f6a746d9", |
| "feature__distogram_atom_idx": "30b6f4ba580a9823ea546c1e3062d747c55b9e10ff92575f2fee7d108ac03afd", |
| "feature__entity_id": "60d8b4ed60f591fead6ac23089395eac185d930d1a10522e6965a7718ef48f46", |
| "feature__has_deletion": "2b0db36e285cb62f61981ad3406942d27f0f13977d936298f523386faddcf288", |
| "feature__input_ids": "cc58c790e7b6c24ee598488df1a6d9caf5435f2f08c16ef8516af9d0d244a7c8", |
| "feature__mol_type": "4384f666de6068cb79824519e4ee61147fae5d20ef57128fd6868b26dc9bc9dc", |
| "feature__msa": "6d4fd19022c4fe8ad43f981b1c0f694791ffdd6b202a9302a974c931d345667f", |
| "feature__msa_attention_mask": "98efb6ca9467a86dc954392dd985343340ff8c00ade2f7715de3751806b54f5d", |
| "feature__ref_atom_name_chars": "bf368b67344b45ebc39d16aad5ec18fbade374125093d05aee27232da0ec09c6", |
| "feature__ref_charge": "0647ccec2eac92e0164150336a5ab7d7da709d7adee24470bf912915c94ea3ba", |
| "feature__ref_element": "3e71e8d13edcc063a7df97064e12c6f839fa5385d6dd3100a83fdecab3953abd", |
| "feature__ref_pos": "03690f4c221ff42556726e6b8f12979c30af9fd8a3de32351e0886c89254c2ff", |
| "feature__ref_space_uid": "77b3a276db54f29e16c4cd55cd7f01d945bcf01da3fc6d963ba0e0bf8a02a172", |
| "feature__res_type": "858a79402df986fd004b5084850ca2b1659c18a7ef9eb84fc5346bb27022e027", |
| "feature__residue_index": "da07d96adab4a6aa0306b553e729a31fbb975dd41be21dc4742433e24d917251", |
| "feature__sym_id": "4384f666de6068cb79824519e4ee61147fae5d20ef57128fd6868b26dc9bc9dc", |
| "feature__token_attention_mask": "d89a70754c9d760a78dbb9489c6c8590390368c0bfca33d8af7ab8e2a356683f", |
| "feature__token_bonds": "17093e521750c8ac2ecfe6c6d366e3f7fd43758573571dec17e1f6741b1b2cdb", |
| "feature__token_index": "da07d96adab4a6aa0306b553e729a31fbb975dd41be21dc4742433e24d917251", |
| "hidden__lm": "96a1d7a61727f881c2277a3653de2338861cc0c282e05e9da1870b4f0f5512d9", |
| "noise__initial_standard_normal": "d001ab2ad141e3a6b9668a1bcca4c6b187193cda7f242af45e944290bc3333ba", |
| "output__atom_pad_mask": "ffcb8e7cdbac0c7d728416672f665bc6d49144d6e89bd98cf8f9d1759f01db34", |
| "output__distogram_logits": "14db8b4cf53d850a2b4232adb4f53d3aff4aa5559a126d4dcd9bbb8e9d95c279", |
| "output__entity_id": "60d8b4ed60f591fead6ac23089395eac185d930d1a10522e6965a7718ef48f46", |
| "output__last_hidden_state": "7575669e9a8aa846a4648e46f73383e7d87b527221d1d0f5ff8d6474c552f1a2", |
| "output__representative_atom_coords": "9909546d6cdb7f8344f614620f8f716e03b112ada0e95e7df249b1ffefd8b08a", |
| "output__residue_index": "da07d96adab4a6aa0306b553e729a31fbb975dd41be21dc4742433e24d917251", |
| "output__sample_atom_coords": "0eecbec45d5aeb484ccda64a9d113cd1dba304db726fbccff61a0899a0d80eeb", |
| "projection__base_z_mlp_input": "227e0b74ef9fe1c3eccfd7e388a13454e366bb49a787a1379e0151efe63aa739" |
| }, |
| "tensor_keys": [ |
| "feature__asym_id", |
| "feature__atom_attention_mask", |
| "feature__atom_to_token", |
| "feature__deletion_mean", |
| "feature__deletion_value", |
| "feature__distogram_atom_idx", |
| "feature__entity_id", |
| "feature__has_deletion", |
| "feature__input_ids", |
| "feature__mol_type", |
| "feature__msa", |
| "feature__msa_attention_mask", |
| "feature__ref_atom_name_chars", |
| "feature__ref_charge", |
| "feature__ref_element", |
| "feature__ref_pos", |
| "feature__ref_space_uid", |
| "feature__res_type", |
| "feature__residue_index", |
| "feature__sym_id", |
| "feature__token_attention_mask", |
| "feature__token_bonds", |
| "feature__token_index", |
| "hidden__lm", |
| "noise__initial_standard_normal", |
| "output__atom_pad_mask", |
| "output__distogram_logits", |
| "output__entity_id", |
| "output__last_hidden_state", |
| "output__representative_atom_coords", |
| "output__residue_index", |
| "output__sample_atom_coords", |
| "projection__base_z_mlp_input" |
| ] |
| } |
|
|
