FastPLMs-artifacts / docs /validation /esmfold2_small_publication.json
lhallee's picture
Archive FastPLMs validation evidence and golden tensors
07cd9e4 verified
Raw History Blame Contribute Delete
40.9 kB
{
"esmfold2_300": {
"checkpoint_revision": "a38a62ae930d157484b331c2bf4241684573adba",
"files": {
".gitattributes": {
"blob_id": "a6344aac8c09253b3b630fb776ae94478aa0275b",
"sha256": null,
"size": 1519
},
"LICENSES/FastPLMs-Apache-2.0.txt": {
"blob_id": "66c354fb5c07a2de923f8de7cfe1e869dac39200",
"sha256": null,
"size": 11601
},
"LICENSES/biohub-esm/LICENSE.md": {
"blob_id": "d6021558652f83cd373d2273f16d9cf402134287",
"sha256": null,
"size": 1095
},
"LICENSES/biohub-esm/THIRD_PARTY_NOTICE.md": {
"blob_id": "56d8280e67083eb023fda21b0091f61ea6bdab33",
"sha256": null,
"size": 948
},
"LICENSES/biohub-transformers/LICENSE": {
"blob_id": "68b7d66c97d66c58de883ed0c451af2b3183e6f3",
"sha256": null,
"size": 11418
},
"LICENSES/protein-ttt/LICENSE": {
"blob_id": "2e8ce69ee735b7021ac28defffdfecb43d287db6",
"sha256": null,
"size": 1071
},
"LICENSES/protein-ttt/SOURCE_RECORD.md": {
"blob_id": "b218841986dc236e71f4f124a8f1b0d668ca36b1",
"sha256": null,
"size": 393
},
"README.md": {
"blob_id": "5810ac6e678c7fda998eda66259c03d64ab8b4df",
"sha256": null,
"size": 8747
},
"THIRD_PARTY_NOTICES.md": {
"blob_id": "23e1ddc075d5f693ba8c1184427da8c8d070c5e8",
"sha256": null,
"size": 4770
},
"config.json": {
"blob_id": "47ec20cf8b234c3b41d6f3ae1bdfe95d4eb4849e",
"sha256": null,
"size": 2955
},
"fastplms/__init__.py": {
"blob_id": "c5eebf713f357493cce628d01762dd91279ed6da",
"sha256": null,
"size": 1857
},
"fastplms/attention/__init__.py": {
"blob_id": "c54da914ec96b371f45b088091bc5eba9ec042b6",
"sha256": null,
"size": 1916
},
"fastplms/attention/_core.py": {
"blob_id": "200d3d93bee777e23dc54e8ed83c399a03ce7d4c",
"sha256": null,
"size": 32003
},
"fastplms/attention/_kernel_lock.py": {
"blob_id": "a859f57c9af23eb30743234d333c2f4ffbdf0406",
"sha256": null,
"size": 7062
},
"fastplms/attention/interfaces.py": {
"blob_id": "7d219c8145fa8532a2a405f32d176f7bbf90dad5",
"sha256": null,
"size": 10282
},
"fastplms/embeddings/__init__.py": {
"blob_id": "dd1ddd5abe67511a6fffadd502152ecc619785b1",
"sha256": null,
"size": 1505
},
"fastplms/embeddings/pooling.py": {
"blob_id": "08d577c0e03c8a41d0c5e9ca924a6eb0cfd307a8",
"sha256": null,
"size": 9875
},
"fastplms/embeddings/runner.py": {
"blob_id": "200082f7742b04334455cc68ae7d67f7ffd6a589",
"sha256": null,
"size": 67610
},
"fastplms/embeddings/storage.py": {
"blob_id": "7fc4d1d02284bd5ccf1f7a0e330fba0d4a8449f3",
"sha256": null,
"size": 66426
},
"fastplms/embeddings/types.py": {
"blob_id": "5166ebd2149db563a2a305f1d866b535d478b5d5",
"sha256": null,
"size": 6463
},
"fastplms/models.toml": {
"blob_id": "21e126f7f4a76085fdb2c9750ac5c81d5e294bb9",
"sha256": null,
"size": 82900
},
"fastplms/models/__init__.py": {
"blob_id": "340b1a15b14b256253ce91ab3eb3114a394ac8e9",
"sha256": null,
"size": 336
},
"fastplms/models/_esm_rotary.py": {
"blob_id": "57b3c5c29efb2a4a26755c24bc49cf9872cc5eea",
"sha256": null,
"size": 3375
},
"fastplms/models/classification_probe.py": {
"blob_id": "61ab5d77ddcadbdc87e3b7d200f4541b28389a3e",
"sha256": null,
"size": 20018
},
"fastplms/models/esm_plusplus/__init__.py": {
"blob_id": "e69de29bb2d1d6434b8b29ae775ad8c2e48c5391",
"sha256": null,
"size": 0
},
"fastplms/models/esm_plusplus/modeling_esm_plusplus.py": {
"blob_id": "d07fa56f11d7d534bd07532c76fe548a5fe57b5e",
"sha256": null,
"size": 79508
},
"fastplms/models/esm_plusplus/modeling_esm_plusplus_sae.py": {
"blob_id": "a74514f3c9e8d8974cd470c4a3d9700033dc087f",
"sha256": null,
"size": 9994
},
"fastplms/models/esmfold2/__init__.py": {
"blob_id": "6868ae5312cab54842dd34ff5a6c649d4974a7bd",
"sha256": null,
"size": 2029
},
"fastplms/models/esmfold2/attention.py": {
"blob_id": "5823fc67550fd0fdbb1bcb7d5f0aa143d1a78c79",
"sha256": null,
"size": 1603
},
"fastplms/models/esmfold2/configuration_esmfold2.py": {
"blob_id": "405a809c64cd16de990b147cd5b8117b9df16f5e",
"sha256": null,
"size": 12740
},
"fastplms/models/esmfold2/embedding.py": {
"blob_id": "e22160f1f45ae92c08ebb42d81409f59874d036e",
"sha256": null,
"size": 4408
},
"fastplms/models/esmfold2/esmfold2_affine3d.py": {
"blob_id": "17c47f2fbbbd90bf8006b58f0b0a537499b4fd23",
"sha256": null,
"size": 20401
},
"fastplms/models/esmfold2/esmfold2_aligner.py": {
"blob_id": "a23b9d6d6b727ba020cef08f9208281e65b02393",
"sha256": null,
"size": 2696
},
"fastplms/models/esmfold2/esmfold2_atom_indexer.py": {
"blob_id": "676cbde76427c6c64672c0fe4e991457cdf57d70",
"sha256": null,
"size": 920
},
"fastplms/models/esmfold2/esmfold2_conformers.py": {
"blob_id": "ddd0e9b55e4175aa0d144c7330ecfcd1d3d902d4",
"sha256": null,
"size": 16121
},
"fastplms/models/esmfold2/esmfold2_constants.py": {
"blob_id": "df0709620fda4f5cdf91b69f6eff2d3cd61e9b19",
"sha256": null,
"size": 6060
},
"fastplms/models/esmfold2/esmfold2_constants_esm3.py": {
"blob_id": "4c044111bb9e5f18d11b207a3b9d2c0a75f83fc5",
"sha256": null,
"size": 2913
},
"fastplms/models/esmfold2/esmfold2_input_builder.py": {
"blob_id": "ca51bc2c91fd4c1e4139f7bcca71898e38e23065",
"sha256": null,
"size": 6859
},
"fastplms/models/esmfold2/esmfold2_metrics.py": {
"blob_id": "fcd665167967a7524b7de15bff5afcc9e4c63bf6",
"sha256": null,
"size": 8161
},
"fastplms/models/esmfold2/esmfold2_misc.py": {
"blob_id": "022edaf3916ab22b21363018e3cbf54963440c0e",
"sha256": null,
"size": 13490
},
"fastplms/models/esmfold2/esmfold2_mmcif_parsing.py": {
"blob_id": "caa4a04d76bf48212f6476008d360640ec6202f4",
"sha256": null,
"size": 16574
},
"fastplms/models/esmfold2/esmfold2_molecular_complex.py": {
"blob_id": "3c8921534302e524a9cc3e11242a6c54f16a53e5",
"sha256": null,
"size": 40861
},
"fastplms/models/esmfold2/esmfold2_msa.py": {
"blob_id": "56c625556d3096e5ac060e1f4571577043d9eb15",
"sha256": null,
"size": 20583
},
"fastplms/models/esmfold2/esmfold2_msa_filter_sequences.py": {
"blob_id": "bc13db7bee2398d291265e6f5a2e95752b2be61e",
"sha256": null,
"size": 3790
},
"fastplms/models/esmfold2/esmfold2_normalize_coordinates.py": {
"blob_id": "45e065247f9b1ac048c697d9b10c0a14605ee8e9",
"sha256": null,
"size": 2546
},
"fastplms/models/esmfold2/esmfold2_output.py": {
"blob_id": "97c846a73358dc5ab25506037ec77f6786441ef4",
"sha256": null,
"size": 7467
},
"fastplms/models/esmfold2/esmfold2_paired_msa.py": {
"blob_id": "44f050b37c83ae70cf70b532380eb11c94a608a3",
"sha256": null,
"size": 9425
},
"fastplms/models/esmfold2/esmfold2_parsing.py": {
"blob_id": "f906d1ff2804c726daf283d6b323f44b43d2a662",
"sha256": null,
"size": 3803
},
"fastplms/models/esmfold2/esmfold2_predicted_aligned_error.py": {
"blob_id": "d6ab3e74beb4ae86d22fb7d879126f5b23a1096e",
"sha256": null,
"size": 4037
},
"fastplms/models/esmfold2/esmfold2_prepare_input.py": {
"blob_id": "870c45754d5e3d41d1f0db90ffb56eec2a5eb3fd",
"sha256": null,
"size": 40735
},
"fastplms/models/esmfold2/esmfold2_processor.py": {
"blob_id": "ba2192ac5bcbab2a0e6bb955a6d10914929b7e66",
"sha256": null,
"size": 11890
},
"fastplms/models/esmfold2/esmfold2_protein_chain.py": {
"blob_id": "acaaaf585e354204bb99916f9d2b2f515c58ea29",
"sha256": null,
"size": 58313
},
"fastplms/models/esmfold2/esmfold2_protein_complex.py": {
"blob_id": "688ea5ce68efecdcc522e1ec4015d60d12bf782a",
"sha256": null,
"size": 49763
},
"fastplms/models/esmfold2/esmfold2_protein_structure.py": {
"blob_id": "1d41330753a1d2d82194f77004645d162bda3617",
"sha256": null,
"size": 8565
},
"fastplms/models/esmfold2/esmfold2_residue_constants.py": {
"blob_id": "42655c58c794c2862036bc993a4970989afbbf05",
"sha256": null,
"size": 32919
},
"fastplms/models/esmfold2/esmfold2_sequential_dataclass.py": {
"blob_id": "97b1a47c3c65d51625541f41abfbd0821617301a",
"sha256": null,
"size": 3928
},
"fastplms/models/esmfold2/esmfold2_system.py": {
"blob_id": "23b69dc10fae713e3b7be76fd9475ab054a58913",
"sha256": null,
"size": 1600
},
"fastplms/models/esmfold2/esmfold2_types.py": {
"blob_id": "38d581ec65c1f918063c271f15b5a71ae1fe7c99",
"sha256": null,
"size": 875
},
"fastplms/models/esmfold2/esmfold2_utils_types.py": {
"blob_id": "13590243d386bc83fa3c01bb28f8ed6fb79762f2",
"sha256": null,
"size": 1058
},
"fastplms/models/esmfold2/modeling_esmfold2.py": {
"blob_id": "2afc02b24c7b2124b2fe360c114d4279f7f7ca47",
"sha256": null,
"size": 80431
},
"fastplms/models/esmfold2/modeling_esmfold2_classification.py": {
"blob_id": "40ef916274039d645951ce86268e70381a10e588",
"sha256": null,
"size": 9096
},
"fastplms/models/esmfold2/modeling_esmfold2_common.py": {
"blob_id": "40e1b9aa46d9ca3704d28e5f65310d5cc4f84754",
"sha256": null,
"size": 105595
},
"fastplms/models/esmfold2/modeling_esmfold2_experimental.py": {
"blob_id": "ad90ba7c7d91ba6e87189afb7347e02edc105a07",
"sha256": null,
"size": 42198
},
"fastplms/models/esmfold2/protein_reference_geometry.json": {
"blob_id": "5cab64b9eaafe3fb4d4bcb37131ae2202587be5a",
"sha256": null,
"size": 11364
},
"fastplms/models/esmfold2/protein_utils.py": {
"blob_id": "1d7d0eaa25d0f4285056c0a8a7eb7ea7f2bd54ec",
"sha256": null,
"size": 7649
},
"fastplms/models/esmfold2/reproducibility.py": {
"blob_id": "92194cec1867567899ff7fd26646961ac44bd607",
"sha256": null,
"size": 1743
},
"fastplms/models/ttt.py": {
"blob_id": "56b4dbae55b65f1d6a9d86111a22815c103d0162",
"sha256": null,
"size": 37757
},
"fastplms/registry.py": {
"blob_id": "94c1caaa3a2ffd46c281e2cad8c26d324f215ad8",
"sha256": null,
"size": 64242
},
"fastplms/runtime.py": {
"blob_id": "49e60dbbe93b8b0f0d48a4814727dc587edc83b2",
"sha256": null,
"size": 2541
},
"fastplms_bundle.py": {
"blob_id": "c881bff49269cff54b4f789dc983fd4a202312bd",
"sha256": null,
"size": 395508
},
"model.safetensors": {
"blob_id": "7af653a4e7da8b90dd9307c25a0a5cb12b10ea4c",
"sha256": "44d6797c5efebf24753d502b40950e0874871c96ceea14f2d7f7e39cebac67fd",
"size": 684606540
},
"modeling_fastplms.py": {
"blob_id": "9acc2057146ace08bf93cbecf5cb730d04ce270e",
"sha256": null,
"size": 7992
},
"preparation-record.json": {
"blob_id": "50ba6323f07ed0d99f65cefbc3989d7b461fe5ee",
"sha256": null,
"size": 24327
},
"requirements.txt": {
"blob_id": "b4be1462b36dc7139d6020d9d36991392e277870",
"sha256": null,
"size": 450
}
},
"remote_verification": {
"files": {
"LICENSES/FastPLMs-Apache-2.0.txt": "git-sha1:66c354fb5c07a2de923f8de7cfe1e869dac39200",
"LICENSES/biohub-esm/LICENSE.md": "git-sha1:d6021558652f83cd373d2273f16d9cf402134287",
"LICENSES/biohub-esm/THIRD_PARTY_NOTICE.md": "git-sha1:56d8280e67083eb023fda21b0091f61ea6bdab33",
"LICENSES/biohub-transformers/LICENSE": "git-sha1:68b7d66c97d66c58de883ed0c451af2b3183e6f3",
"LICENSES/protein-ttt/LICENSE": "git-sha1:2e8ce69ee735b7021ac28defffdfecb43d287db6",
"LICENSES/protein-ttt/SOURCE_RECORD.md": "git-sha1:b218841986dc236e71f4f124a8f1b0d668ca36b1",
"README.md": "git-sha1:84eb38fd1832777619c2d4210e3d12eab55cc95c",
"THIRD_PARTY_NOTICES.md": "git-sha1:23e1ddc075d5f693ba8c1184427da8c8d070c5e8",
"config.json": "git-sha1:8701935b9d6b7af0ce13b9cfdc5c2559bb8d0cd5",
"fastplms/__init__.py": "git-sha1:c5eebf713f357493cce628d01762dd91279ed6da",
"fastplms/attention/__init__.py": "git-sha1:c54da914ec96b371f45b088091bc5eba9ec042b6",
"fastplms/attention/_core.py": "git-sha1:200d3d93bee777e23dc54e8ed83c399a03ce7d4c",
"fastplms/attention/_kernel_lock.py": "git-sha1:a859f57c9af23eb30743234d333c2f4ffbdf0406",
"fastplms/attention/interfaces.py": "git-sha1:7d219c8145fa8532a2a405f32d176f7bbf90dad5",
"fastplms/embeddings/__init__.py": "git-sha1:dd1ddd5abe67511a6fffadd502152ecc619785b1",
"fastplms/embeddings/pooling.py": "git-sha1:08d577c0e03c8a41d0c5e9ca924a6eb0cfd307a8",
"fastplms/embeddings/runner.py": "git-sha1:200082f7742b04334455cc68ae7d67f7ffd6a589",
"fastplms/embeddings/storage.py": "git-sha1:7fc4d1d02284bd5ccf1f7a0e330fba0d4a8449f3",
"fastplms/embeddings/types.py": "git-sha1:5166ebd2149db563a2a305f1d866b535d478b5d5",
"fastplms/models.toml": "git-sha1:b59b0e0b0a64836560e1aa4b353dd037f2c887bc",
"fastplms/models/__init__.py": "git-sha1:340b1a15b14b256253ce91ab3eb3114a394ac8e9",
"fastplms/models/_esm_rotary.py": "git-sha1:57b3c5c29efb2a4a26755c24bc49cf9872cc5eea",
"fastplms/models/classification_probe.py": "git-sha1:61ab5d77ddcadbdc87e3b7d200f4541b28389a3e",
"fastplms/models/esm_plusplus/__init__.py": "git-sha1:e69de29bb2d1d6434b8b29ae775ad8c2e48c5391",
"fastplms/models/esm_plusplus/modeling_esm_plusplus.py": "git-sha1:d07fa56f11d7d534bd07532c76fe548a5fe57b5e",
"fastplms/models/esm_plusplus/modeling_esm_plusplus_sae.py": "git-sha1:a74514f3c9e8d8974cd470c4a3d9700033dc087f",
"fastplms/models/esmfold2/__init__.py": "git-sha1:6868ae5312cab54842dd34ff5a6c649d4974a7bd",
"fastplms/models/esmfold2/attention.py": "git-sha1:5823fc67550fd0fdbb1bcb7d5f0aa143d1a78c79",
"fastplms/models/esmfold2/configuration_esmfold2.py": "git-sha1:405a809c64cd16de990b147cd5b8117b9df16f5e",
"fastplms/models/esmfold2/embedding.py": "git-sha1:e22160f1f45ae92c08ebb42d81409f59874d036e",
"fastplms/models/esmfold2/esmfold2_affine3d.py": "git-sha1:17c47f2fbbbd90bf8006b58f0b0a537499b4fd23",
"fastplms/models/esmfold2/esmfold2_aligner.py": "git-sha1:a23b9d6d6b727ba020cef08f9208281e65b02393",
"fastplms/models/esmfold2/esmfold2_atom_indexer.py": "git-sha1:676cbde76427c6c64672c0fe4e991457cdf57d70",
"fastplms/models/esmfold2/esmfold2_conformers.py": "git-sha1:ddd0e9b55e4175aa0d144c7330ecfcd1d3d902d4",
"fastplms/models/esmfold2/esmfold2_constants.py": "git-sha1:df0709620fda4f5cdf91b69f6eff2d3cd61e9b19",
"fastplms/models/esmfold2/esmfold2_constants_esm3.py": "git-sha1:4c044111bb9e5f18d11b207a3b9d2c0a75f83fc5",
"fastplms/models/esmfold2/esmfold2_input_builder.py": "git-sha1:ca51bc2c91fd4c1e4139f7bcca71898e38e23065",
"fastplms/models/esmfold2/esmfold2_metrics.py": "git-sha1:fcd665167967a7524b7de15bff5afcc9e4c63bf6",
"fastplms/models/esmfold2/esmfold2_misc.py": "git-sha1:022edaf3916ab22b21363018e3cbf54963440c0e",
"fastplms/models/esmfold2/esmfold2_mmcif_parsing.py": "git-sha1:caa4a04d76bf48212f6476008d360640ec6202f4",
"fastplms/models/esmfold2/esmfold2_molecular_complex.py": "git-sha1:3c8921534302e524a9cc3e11242a6c54f16a53e5",
"fastplms/models/esmfold2/esmfold2_msa.py": "git-sha1:56c625556d3096e5ac060e1f4571577043d9eb15",
"fastplms/models/esmfold2/esmfold2_msa_filter_sequences.py": "git-sha1:bc13db7bee2398d291265e6f5a2e95752b2be61e",
"fastplms/models/esmfold2/esmfold2_normalize_coordinates.py": "git-sha1:45e065247f9b1ac048c697d9b10c0a14605ee8e9",
"fastplms/models/esmfold2/esmfold2_output.py": "git-sha1:97c846a73358dc5ab25506037ec77f6786441ef4",
"fastplms/models/esmfold2/esmfold2_paired_msa.py": "git-sha1:44f050b37c83ae70cf70b532380eb11c94a608a3",
"fastplms/models/esmfold2/esmfold2_parsing.py": "git-sha1:f906d1ff2804c726daf283d6b323f44b43d2a662",
"fastplms/models/esmfold2/esmfold2_predicted_aligned_error.py": "git-sha1:d6ab3e74beb4ae86d22fb7d879126f5b23a1096e",
"fastplms/models/esmfold2/esmfold2_prepare_input.py": "git-sha1:870c45754d5e3d41d1f0db90ffb56eec2a5eb3fd",
"fastplms/models/esmfold2/esmfold2_processor.py": "git-sha1:ba2192ac5bcbab2a0e6bb955a6d10914929b7e66",
"fastplms/models/esmfold2/esmfold2_protein_chain.py": "git-sha1:acaaaf585e354204bb99916f9d2b2f515c58ea29",
"fastplms/models/esmfold2/esmfold2_protein_complex.py": "git-sha1:688ea5ce68efecdcc522e1ec4015d60d12bf782a",
"fastplms/models/esmfold2/esmfold2_protein_structure.py": "git-sha1:1d41330753a1d2d82194f77004645d162bda3617",
"fastplms/models/esmfold2/esmfold2_residue_constants.py": "git-sha1:42655c58c794c2862036bc993a4970989afbbf05",
"fastplms/models/esmfold2/esmfold2_sequential_dataclass.py": "git-sha1:97b1a47c3c65d51625541f41abfbd0821617301a",
"fastplms/models/esmfold2/esmfold2_system.py": "git-sha1:23b69dc10fae713e3b7be76fd9475ab054a58913",
"fastplms/models/esmfold2/esmfold2_types.py": "git-sha1:38d581ec65c1f918063c271f15b5a71ae1fe7c99",
"fastplms/models/esmfold2/esmfold2_utils_types.py": "git-sha1:13590243d386bc83fa3c01bb28f8ed6fb79762f2",
"fastplms/models/esmfold2/modeling_esmfold2.py": "git-sha1:2afc02b24c7b2124b2fe360c114d4279f7f7ca47",
"fastplms/models/esmfold2/modeling_esmfold2_classification.py": "git-sha1:40ef916274039d645951ce86268e70381a10e588",
"fastplms/models/esmfold2/modeling_esmfold2_common.py": "git-sha1:40e1b9aa46d9ca3704d28e5f65310d5cc4f84754",
"fastplms/models/esmfold2/modeling_esmfold2_experimental.py": "git-sha1:ad90ba7c7d91ba6e87189afb7347e02edc105a07",
"fastplms/models/esmfold2/protein_reference_geometry.json": "git-sha1:5cab64b9eaafe3fb4d4bcb37131ae2202587be5a",
"fastplms/models/esmfold2/protein_utils.py": "git-sha1:1d7d0eaa25d0f4285056c0a8a7eb7ea7f2bd54ec",
"fastplms/models/esmfold2/reproducibility.py": "git-sha1:92194cec1867567899ff7fd26646961ac44bd607",
"fastplms/models/ttt.py": "git-sha1:56b4dbae55b65f1d6a9d86111a22815c103d0162",
"fastplms/registry.py": "git-sha1:94c1caaa3a2ffd46c281e2cad8c26d324f215ad8",
"fastplms/runtime.py": "git-sha1:49e60dbbe93b8b0f0d48a4814727dc587edc83b2",
"fastplms_bundle.py": "git-sha1:7680f1a17ca06befc43ca0a2608fcc94fb3cef18",
"model.safetensors": "sha256:44d6797c5efebf24753d502b40950e0874871c96ceea14f2d7f7e39cebac67fd",
"modeling_fastplms.py": "git-sha1:70de8475cfc53606be00abf455fd37eec683097d",
"preparation-record.json": "git-sha1:7d8abc1916406766055b6cfc9250453f8d5067f2",
"requirements.txt": "git-sha1:b4be1462b36dc7139d6020d9d36991392e277870"
},
"remote_only_files": [
".gitattributes"
],
"status": "passed"
},
"repository": "Synthyra/ESMFold2-300",
"runtime_revision": "d28d60c7ebe32c793d7e5387b258df3f2b3d093d"
},
"esmfold2_600": {
"checkpoint_revision": "71c67d0b2b73dc245ea7c3cc0d0476439a882d08",
"files": {
".gitattributes": {
"blob_id": "a6344aac8c09253b3b630fb776ae94478aa0275b",
"sha256": null,
"size": 1519
},
"LICENSES/FastPLMs-Apache-2.0.txt": {
"blob_id": "66c354fb5c07a2de923f8de7cfe1e869dac39200",
"sha256": null,
"size": 11601
},
"LICENSES/biohub-esm/LICENSE.md": {
"blob_id": "d6021558652f83cd373d2273f16d9cf402134287",
"sha256": null,
"size": 1095
},
"LICENSES/biohub-esm/THIRD_PARTY_NOTICE.md": {
"blob_id": "56d8280e67083eb023fda21b0091f61ea6bdab33",
"sha256": null,
"size": 948
},
"LICENSES/biohub-transformers/LICENSE": {
"blob_id": "68b7d66c97d66c58de883ed0c451af2b3183e6f3",
"sha256": null,
"size": 11418
},
"LICENSES/protein-ttt/LICENSE": {
"blob_id": "2e8ce69ee735b7021ac28defffdfecb43d287db6",
"sha256": null,
"size": 1071
},
"LICENSES/protein-ttt/SOURCE_RECORD.md": {
"blob_id": "b218841986dc236e71f4f124a8f1b0d668ca36b1",
"sha256": null,
"size": 393
},
"README.md": {
"blob_id": "ed68901248fe4853c9afc8c0559f94308275f8fb",
"sha256": null,
"size": 8784
},
"THIRD_PARTY_NOTICES.md": {
"blob_id": "23e1ddc075d5f693ba8c1184427da8c8d070c5e8",
"sha256": null,
"size": 4770
},
"config.json": {
"blob_id": "8e271837cbdada96c4974c8e543f84065e0f06f1",
"sha256": null,
"size": 2956
},
"fastplms/__init__.py": {
"blob_id": "c5eebf713f357493cce628d01762dd91279ed6da",
"sha256": null,
"size": 1857
},
"fastplms/attention/__init__.py": {
"blob_id": "c54da914ec96b371f45b088091bc5eba9ec042b6",
"sha256": null,
"size": 1916
},
"fastplms/attention/_core.py": {
"blob_id": "200d3d93bee777e23dc54e8ed83c399a03ce7d4c",
"sha256": null,
"size": 32003
},
"fastplms/attention/_kernel_lock.py": {
"blob_id": "a859f57c9af23eb30743234d333c2f4ffbdf0406",
"sha256": null,
"size": 7062
},
"fastplms/attention/interfaces.py": {
"blob_id": "7d219c8145fa8532a2a405f32d176f7bbf90dad5",
"sha256": null,
"size": 10282
},
"fastplms/embeddings/__init__.py": {
"blob_id": "dd1ddd5abe67511a6fffadd502152ecc619785b1",
"sha256": null,
"size": 1505
},
"fastplms/embeddings/pooling.py": {
"blob_id": "08d577c0e03c8a41d0c5e9ca924a6eb0cfd307a8",
"sha256": null,
"size": 9875
},
"fastplms/embeddings/runner.py": {
"blob_id": "200082f7742b04334455cc68ae7d67f7ffd6a589",
"sha256": null,
"size": 67610
},
"fastplms/embeddings/storage.py": {
"blob_id": "7fc4d1d02284bd5ccf1f7a0e330fba0d4a8449f3",
"sha256": null,
"size": 66426
},
"fastplms/embeddings/types.py": {
"blob_id": "5166ebd2149db563a2a305f1d866b535d478b5d5",
"sha256": null,
"size": 6463
},
"fastplms/models.toml": {
"blob_id": "21e126f7f4a76085fdb2c9750ac5c81d5e294bb9",
"sha256": null,
"size": 82900
},
"fastplms/models/__init__.py": {
"blob_id": "340b1a15b14b256253ce91ab3eb3114a394ac8e9",
"sha256": null,
"size": 336
},
"fastplms/models/_esm_rotary.py": {
"blob_id": "57b3c5c29efb2a4a26755c24bc49cf9872cc5eea",
"sha256": null,
"size": 3375
},
"fastplms/models/classification_probe.py": {
"blob_id": "61ab5d77ddcadbdc87e3b7d200f4541b28389a3e",
"sha256": null,
"size": 20018
},
"fastplms/models/esm_plusplus/__init__.py": {
"blob_id": "e69de29bb2d1d6434b8b29ae775ad8c2e48c5391",
"sha256": null,
"size": 0
},
"fastplms/models/esm_plusplus/modeling_esm_plusplus.py": {
"blob_id": "d07fa56f11d7d534bd07532c76fe548a5fe57b5e",
"sha256": null,
"size": 79508
},
"fastplms/models/esm_plusplus/modeling_esm_plusplus_sae.py": {
"blob_id": "a74514f3c9e8d8974cd470c4a3d9700033dc087f",
"sha256": null,
"size": 9994
},
"fastplms/models/esmfold2/__init__.py": {
"blob_id": "6868ae5312cab54842dd34ff5a6c649d4974a7bd",
"sha256": null,
"size": 2029
},
"fastplms/models/esmfold2/attention.py": {
"blob_id": "5823fc67550fd0fdbb1bcb7d5f0aa143d1a78c79",
"sha256": null,
"size": 1603
},
"fastplms/models/esmfold2/configuration_esmfold2.py": {
"blob_id": "405a809c64cd16de990b147cd5b8117b9df16f5e",
"sha256": null,
"size": 12740
},
"fastplms/models/esmfold2/embedding.py": {
"blob_id": "e22160f1f45ae92c08ebb42d81409f59874d036e",
"sha256": null,
"size": 4408
},
"fastplms/models/esmfold2/esmfold2_affine3d.py": {
"blob_id": "17c47f2fbbbd90bf8006b58f0b0a537499b4fd23",
"sha256": null,
"size": 20401
},
"fastplms/models/esmfold2/esmfold2_aligner.py": {
"blob_id": "a23b9d6d6b727ba020cef08f9208281e65b02393",
"sha256": null,
"size": 2696
},
"fastplms/models/esmfold2/esmfold2_atom_indexer.py": {
"blob_id": "676cbde76427c6c64672c0fe4e991457cdf57d70",
"sha256": null,
"size": 920
},
"fastplms/models/esmfold2/esmfold2_conformers.py": {
"blob_id": "ddd0e9b55e4175aa0d144c7330ecfcd1d3d902d4",
"sha256": null,
"size": 16121
},
"fastplms/models/esmfold2/esmfold2_constants.py": {
"blob_id": "df0709620fda4f5cdf91b69f6eff2d3cd61e9b19",
"sha256": null,
"size": 6060
},
"fastplms/models/esmfold2/esmfold2_constants_esm3.py": {
"blob_id": "4c044111bb9e5f18d11b207a3b9d2c0a75f83fc5",
"sha256": null,
"size": 2913
},
"fastplms/models/esmfold2/esmfold2_input_builder.py": {
"blob_id": "ca51bc2c91fd4c1e4139f7bcca71898e38e23065",
"sha256": null,
"size": 6859
},
"fastplms/models/esmfold2/esmfold2_metrics.py": {
"blob_id": "fcd665167967a7524b7de15bff5afcc9e4c63bf6",
"sha256": null,
"size": 8161
},
"fastplms/models/esmfold2/esmfold2_misc.py": {
"blob_id": "022edaf3916ab22b21363018e3cbf54963440c0e",
"sha256": null,
"size": 13490
},
"fastplms/models/esmfold2/esmfold2_mmcif_parsing.py": {
"blob_id": "caa4a04d76bf48212f6476008d360640ec6202f4",
"sha256": null,
"size": 16574
},
"fastplms/models/esmfold2/esmfold2_molecular_complex.py": {
"blob_id": "3c8921534302e524a9cc3e11242a6c54f16a53e5",
"sha256": null,
"size": 40861
},
"fastplms/models/esmfold2/esmfold2_msa.py": {
"blob_id": "56c625556d3096e5ac060e1f4571577043d9eb15",
"sha256": null,
"size": 20583
},
"fastplms/models/esmfold2/esmfold2_msa_filter_sequences.py": {
"blob_id": "bc13db7bee2398d291265e6f5a2e95752b2be61e",
"sha256": null,
"size": 3790
},
"fastplms/models/esmfold2/esmfold2_normalize_coordinates.py": {
"blob_id": "45e065247f9b1ac048c697d9b10c0a14605ee8e9",
"sha256": null,
"size": 2546
},
"fastplms/models/esmfold2/esmfold2_output.py": {
"blob_id": "97c846a73358dc5ab25506037ec77f6786441ef4",
"sha256": null,
"size": 7467
},
"fastplms/models/esmfold2/esmfold2_paired_msa.py": {
"blob_id": "44f050b37c83ae70cf70b532380eb11c94a608a3",
"sha256": null,
"size": 9425
},
"fastplms/models/esmfold2/esmfold2_parsing.py": {
"blob_id": "f906d1ff2804c726daf283d6b323f44b43d2a662",
"sha256": null,
"size": 3803
},
"fastplms/models/esmfold2/esmfold2_predicted_aligned_error.py": {
"blob_id": "d6ab3e74beb4ae86d22fb7d879126f5b23a1096e",
"sha256": null,
"size": 4037
},
"fastplms/models/esmfold2/esmfold2_prepare_input.py": {
"blob_id": "870c45754d5e3d41d1f0db90ffb56eec2a5eb3fd",
"sha256": null,
"size": 40735
},
"fastplms/models/esmfold2/esmfold2_processor.py": {
"blob_id": "ba2192ac5bcbab2a0e6bb955a6d10914929b7e66",
"sha256": null,
"size": 11890
},
"fastplms/models/esmfold2/esmfold2_protein_chain.py": {
"blob_id": "acaaaf585e354204bb99916f9d2b2f515c58ea29",
"sha256": null,
"size": 58313
},
"fastplms/models/esmfold2/esmfold2_protein_complex.py": {
"blob_id": "688ea5ce68efecdcc522e1ec4015d60d12bf782a",
"sha256": null,
"size": 49763
},
"fastplms/models/esmfold2/esmfold2_protein_structure.py": {
"blob_id": "1d41330753a1d2d82194f77004645d162bda3617",
"sha256": null,
"size": 8565
},
"fastplms/models/esmfold2/esmfold2_residue_constants.py": {
"blob_id": "42655c58c794c2862036bc993a4970989afbbf05",
"sha256": null,
"size": 32919
},
"fastplms/models/esmfold2/esmfold2_sequential_dataclass.py": {
"blob_id": "97b1a47c3c65d51625541f41abfbd0821617301a",
"sha256": null,
"size": 3928
},
"fastplms/models/esmfold2/esmfold2_system.py": {
"blob_id": "23b69dc10fae713e3b7be76fd9475ab054a58913",
"sha256": null,
"size": 1600
},
"fastplms/models/esmfold2/esmfold2_types.py": {
"blob_id": "38d581ec65c1f918063c271f15b5a71ae1fe7c99",
"sha256": null,
"size": 875
},
"fastplms/models/esmfold2/esmfold2_utils_types.py": {
"blob_id": "13590243d386bc83fa3c01bb28f8ed6fb79762f2",
"sha256": null,
"size": 1058
},
"fastplms/models/esmfold2/modeling_esmfold2.py": {
"blob_id": "2afc02b24c7b2124b2fe360c114d4279f7f7ca47",
"sha256": null,
"size": 80431
},
"fastplms/models/esmfold2/modeling_esmfold2_classification.py": {
"blob_id": "40ef916274039d645951ce86268e70381a10e588",
"sha256": null,
"size": 9096
},
"fastplms/models/esmfold2/modeling_esmfold2_common.py": {
"blob_id": "40e1b9aa46d9ca3704d28e5f65310d5cc4f84754",
"sha256": null,
"size": 105595
},
"fastplms/models/esmfold2/modeling_esmfold2_experimental.py": {
"blob_id": "ad90ba7c7d91ba6e87189afb7347e02edc105a07",
"sha256": null,
"size": 42198
},
"fastplms/models/esmfold2/protein_reference_geometry.json": {
"blob_id": "5cab64b9eaafe3fb4d4bcb37131ae2202587be5a",
"sha256": null,
"size": 11364
},
"fastplms/models/esmfold2/protein_utils.py": {
"blob_id": "1d7d0eaa25d0f4285056c0a8a7eb7ea7f2bd54ec",
"sha256": null,
"size": 7649
},
"fastplms/models/esmfold2/reproducibility.py": {
"blob_id": "92194cec1867567899ff7fd26646961ac44bd607",
"sha256": null,
"size": 1743
},
"fastplms/models/ttt.py": {
"blob_id": "56b4dbae55b65f1d6a9d86111a22815c103d0162",
"sha256": null,
"size": 37757
},
"fastplms/registry.py": {
"blob_id": "94c1caaa3a2ffd46c281e2cad8c26d324f215ad8",
"sha256": null,
"size": 64242
},
"fastplms/runtime.py": {
"blob_id": "49e60dbbe93b8b0f0d48a4814727dc587edc83b2",
"sha256": null,
"size": 2541
},
"fastplms_bundle.py": {
"blob_id": "c881bff49269cff54b4f789dc983fd4a202312bd",
"sha256": null,
"size": 395508
},
"model.safetensors": {
"blob_id": "d9225c09e2f6378872db29cdcfc36ac4e67d8eda",
"sha256": "11a53c1b4700b6c62a5a464fc3ec7076160c19e8584157f88e13275116cfd602",
"size": 684804708
},
"modeling_fastplms.py": {
"blob_id": "9acc2057146ace08bf93cbecf5cb730d04ce270e",
"sha256": null,
"size": 7992
},
"preparation-record.json": {
"blob_id": "2d67018c172c86cda8c99a1a41ff1e80a6e99753",
"sha256": null,
"size": 24327
},
"requirements.txt": {
"blob_id": "07d30a5623e40adeb30d564a7dda27edabe97861",
"sha256": null,
"size": 450
}
},
"remote_verification": {
"files": {
"LICENSES/FastPLMs-Apache-2.0.txt": "git-sha1:66c354fb5c07a2de923f8de7cfe1e869dac39200",
"LICENSES/biohub-esm/LICENSE.md": "git-sha1:d6021558652f83cd373d2273f16d9cf402134287",
"LICENSES/biohub-esm/THIRD_PARTY_NOTICE.md": "git-sha1:56d8280e67083eb023fda21b0091f61ea6bdab33",
"LICENSES/biohub-transformers/LICENSE": "git-sha1:68b7d66c97d66c58de883ed0c451af2b3183e6f3",
"LICENSES/protein-ttt/LICENSE": "git-sha1:2e8ce69ee735b7021ac28defffdfecb43d287db6",
"LICENSES/protein-ttt/SOURCE_RECORD.md": "git-sha1:b218841986dc236e71f4f124a8f1b0d668ca36b1",
"README.md": "git-sha1:08fe3df48019e4ccd480e7660c244df9d0a4ecdd",
"THIRD_PARTY_NOTICES.md": "git-sha1:23e1ddc075d5f693ba8c1184427da8c8d070c5e8",
"config.json": "git-sha1:8dfaf7dff1d16b6e8912b5d55a7199eda0c5b443",
"fastplms/__init__.py": "git-sha1:c5eebf713f357493cce628d01762dd91279ed6da",
"fastplms/attention/__init__.py": "git-sha1:c54da914ec96b371f45b088091bc5eba9ec042b6",
"fastplms/attention/_core.py": "git-sha1:200d3d93bee777e23dc54e8ed83c399a03ce7d4c",
"fastplms/attention/_kernel_lock.py": "git-sha1:a859f57c9af23eb30743234d333c2f4ffbdf0406",
"fastplms/attention/interfaces.py": "git-sha1:7d219c8145fa8532a2a405f32d176f7bbf90dad5",
"fastplms/embeddings/__init__.py": "git-sha1:dd1ddd5abe67511a6fffadd502152ecc619785b1",
"fastplms/embeddings/pooling.py": "git-sha1:08d577c0e03c8a41d0c5e9ca924a6eb0cfd307a8",
"fastplms/embeddings/runner.py": "git-sha1:200082f7742b04334455cc68ae7d67f7ffd6a589",
"fastplms/embeddings/storage.py": "git-sha1:7fc4d1d02284bd5ccf1f7a0e330fba0d4a8449f3",
"fastplms/embeddings/types.py": "git-sha1:5166ebd2149db563a2a305f1d866b535d478b5d5",
"fastplms/models.toml": "git-sha1:b59b0e0b0a64836560e1aa4b353dd037f2c887bc",
"fastplms/models/__init__.py": "git-sha1:340b1a15b14b256253ce91ab3eb3114a394ac8e9",
"fastplms/models/_esm_rotary.py": "git-sha1:57b3c5c29efb2a4a26755c24bc49cf9872cc5eea",
"fastplms/models/classification_probe.py": "git-sha1:61ab5d77ddcadbdc87e3b7d200f4541b28389a3e",
"fastplms/models/esm_plusplus/__init__.py": "git-sha1:e69de29bb2d1d6434b8b29ae775ad8c2e48c5391",
"fastplms/models/esm_plusplus/modeling_esm_plusplus.py": "git-sha1:d07fa56f11d7d534bd07532c76fe548a5fe57b5e",
"fastplms/models/esm_plusplus/modeling_esm_plusplus_sae.py": "git-sha1:a74514f3c9e8d8974cd470c4a3d9700033dc087f",
"fastplms/models/esmfold2/__init__.py": "git-sha1:6868ae5312cab54842dd34ff5a6c649d4974a7bd",
"fastplms/models/esmfold2/attention.py": "git-sha1:5823fc67550fd0fdbb1bcb7d5f0aa143d1a78c79",
"fastplms/models/esmfold2/configuration_esmfold2.py": "git-sha1:405a809c64cd16de990b147cd5b8117b9df16f5e",
"fastplms/models/esmfold2/embedding.py": "git-sha1:e22160f1f45ae92c08ebb42d81409f59874d036e",
"fastplms/models/esmfold2/esmfold2_affine3d.py": "git-sha1:17c47f2fbbbd90bf8006b58f0b0a537499b4fd23",
"fastplms/models/esmfold2/esmfold2_aligner.py": "git-sha1:a23b9d6d6b727ba020cef08f9208281e65b02393",
"fastplms/models/esmfold2/esmfold2_atom_indexer.py": "git-sha1:676cbde76427c6c64672c0fe4e991457cdf57d70",
"fastplms/models/esmfold2/esmfold2_conformers.py": "git-sha1:ddd0e9b55e4175aa0d144c7330ecfcd1d3d902d4",
"fastplms/models/esmfold2/esmfold2_constants.py": "git-sha1:df0709620fda4f5cdf91b69f6eff2d3cd61e9b19",
"fastplms/models/esmfold2/esmfold2_constants_esm3.py": "git-sha1:4c044111bb9e5f18d11b207a3b9d2c0a75f83fc5",
"fastplms/models/esmfold2/esmfold2_input_builder.py": "git-sha1:ca51bc2c91fd4c1e4139f7bcca71898e38e23065",
"fastplms/models/esmfold2/esmfold2_metrics.py": "git-sha1:fcd665167967a7524b7de15bff5afcc9e4c63bf6",
"fastplms/models/esmfold2/esmfold2_misc.py": "git-sha1:022edaf3916ab22b21363018e3cbf54963440c0e",
"fastplms/models/esmfold2/esmfold2_mmcif_parsing.py": "git-sha1:caa4a04d76bf48212f6476008d360640ec6202f4",
"fastplms/models/esmfold2/esmfold2_molecular_complex.py": "git-sha1:3c8921534302e524a9cc3e11242a6c54f16a53e5",
"fastplms/models/esmfold2/esmfold2_msa.py": "git-sha1:56c625556d3096e5ac060e1f4571577043d9eb15",
"fastplms/models/esmfold2/esmfold2_msa_filter_sequences.py": "git-sha1:bc13db7bee2398d291265e6f5a2e95752b2be61e",
"fastplms/models/esmfold2/esmfold2_normalize_coordinates.py": "git-sha1:45e065247f9b1ac048c697d9b10c0a14605ee8e9",
"fastplms/models/esmfold2/esmfold2_output.py": "git-sha1:97c846a73358dc5ab25506037ec77f6786441ef4",
"fastplms/models/esmfold2/esmfold2_paired_msa.py": "git-sha1:44f050b37c83ae70cf70b532380eb11c94a608a3",
"fastplms/models/esmfold2/esmfold2_parsing.py": "git-sha1:f906d1ff2804c726daf283d6b323f44b43d2a662",
"fastplms/models/esmfold2/esmfold2_predicted_aligned_error.py": "git-sha1:d6ab3e74beb4ae86d22fb7d879126f5b23a1096e",
"fastplms/models/esmfold2/esmfold2_prepare_input.py": "git-sha1:870c45754d5e3d41d1f0db90ffb56eec2a5eb3fd",
"fastplms/models/esmfold2/esmfold2_processor.py": "git-sha1:ba2192ac5bcbab2a0e6bb955a6d10914929b7e66",
"fastplms/models/esmfold2/esmfold2_protein_chain.py": "git-sha1:acaaaf585e354204bb99916f9d2b2f515c58ea29",
"fastplms/models/esmfold2/esmfold2_protein_complex.py": "git-sha1:688ea5ce68efecdcc522e1ec4015d60d12bf782a",
"fastplms/models/esmfold2/esmfold2_protein_structure.py": "git-sha1:1d41330753a1d2d82194f77004645d162bda3617",
"fastplms/models/esmfold2/esmfold2_residue_constants.py": "git-sha1:42655c58c794c2862036bc993a4970989afbbf05",
"fastplms/models/esmfold2/esmfold2_sequential_dataclass.py": "git-sha1:97b1a47c3c65d51625541f41abfbd0821617301a",
"fastplms/models/esmfold2/esmfold2_system.py": "git-sha1:23b69dc10fae713e3b7be76fd9475ab054a58913",
"fastplms/models/esmfold2/esmfold2_types.py": "git-sha1:38d581ec65c1f918063c271f15b5a71ae1fe7c99",
"fastplms/models/esmfold2/esmfold2_utils_types.py": "git-sha1:13590243d386bc83fa3c01bb28f8ed6fb79762f2",
"fastplms/models/esmfold2/modeling_esmfold2.py": "git-sha1:2afc02b24c7b2124b2fe360c114d4279f7f7ca47",
"fastplms/models/esmfold2/modeling_esmfold2_classification.py": "git-sha1:40ef916274039d645951ce86268e70381a10e588",
"fastplms/models/esmfold2/modeling_esmfold2_common.py": "git-sha1:40e1b9aa46d9ca3704d28e5f65310d5cc4f84754",
"fastplms/models/esmfold2/modeling_esmfold2_experimental.py": "git-sha1:ad90ba7c7d91ba6e87189afb7347e02edc105a07",
"fastplms/models/esmfold2/protein_reference_geometry.json": "git-sha1:5cab64b9eaafe3fb4d4bcb37131ae2202587be5a",
"fastplms/models/esmfold2/protein_utils.py": "git-sha1:1d7d0eaa25d0f4285056c0a8a7eb7ea7f2bd54ec",
"fastplms/models/esmfold2/reproducibility.py": "git-sha1:92194cec1867567899ff7fd26646961ac44bd607",
"fastplms/models/ttt.py": "git-sha1:56b4dbae55b65f1d6a9d86111a22815c103d0162",
"fastplms/registry.py": "git-sha1:94c1caaa3a2ffd46c281e2cad8c26d324f215ad8",
"fastplms/runtime.py": "git-sha1:49e60dbbe93b8b0f0d48a4814727dc587edc83b2",
"fastplms_bundle.py": "git-sha1:7680f1a17ca06befc43ca0a2608fcc94fb3cef18",
"model.safetensors": "sha256:11a53c1b4700b6c62a5a464fc3ec7076160c19e8584157f88e13275116cfd602",
"modeling_fastplms.py": "git-sha1:70de8475cfc53606be00abf455fd37eec683097d",
"preparation-record.json": "git-sha1:4a352f390ee82b08dd9f904ba6a802960cadf092",
"requirements.txt": "git-sha1:07d30a5623e40adeb30d564a7dda27edabe97861"
},
"remote_only_files": [
".gitattributes"
],
"status": "passed"
},
"repository": "Synthyra/ESMFold2-600",
"runtime_revision": "8fee248af8267a0778ca995500c7a3630a315791"
}
}