Archive v2-reproduction-20260922 evaluate-esmfold2
Browse files- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/completion.json +35 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/export.json +36 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/inputs/split-report.json +66 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/records.json +0 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/request.json +685 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/skipped.json +20 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/summary.json +276 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/targets.json +0 -0
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/completion.json
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{
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"schema_version": 1,
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"status": "complete",
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"completed_at": "2026-09-22T19:26:48.333091+00:00",
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"evaluation_id": "v2-reproduction-20260922",
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"model_id": "esmfold2",
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"split": "test",
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"public_files": {
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"inputs/split-report.json": {
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"size": 1630,
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"sha256": "1b004da92bc8ae7867f9a8b20ef39246b70f7b5e660a27aa0b5dd21567d07174"
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"targets.json": {
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"size": 695798,
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"records.json": {
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"sha256": "ad896366d522ac58303a8181ac6045c7e993fb725774d50d1e81b86e5ab23168"
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"request.json": {
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"skipped.json": {
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"size": 525,
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"sha256": "9ff49a10138679cdf37b01b390cd27963f195153413c6a9351c1b89e04721588"
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"summary.json": {
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"size": 10354,
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"sha256": "a7689e8daf1af46fd089800a8c7e40acc046c83335650ade3b93e49c1a368e6c"
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"private_files": {}
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}
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/export.json
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{
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"schema_version": 1,
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"status": "complete",
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"operation": "public_evaluation_export",
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"checkpoint_weights_included": false,
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"files": {
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"inputs/split-report.json": {
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"size": 1630,
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"sha256": "1b004da92bc8ae7867f9a8b20ef39246b70f7b5e660a27aa0b5dd21567d07174"
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"targets.json": {
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"size": 695798,
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"sha256": "f97c983e51416f73bdc5607b20f6358f1fd70ba59a3379a44119255fbbb88aee"
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"records.json": {
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"size": 8907159,
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"sha256": "ad896366d522ac58303a8181ac6045c7e993fb725774d50d1e81b86e5ab23168"
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"request.json": {
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"size": 27883,
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"sha256": "5e6839c08390a619aa00e2e705f390b56253988d8130d1a9fc21fd37afebff7d"
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"skipped.json": {
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"size": 525,
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"sha256": "9ff49a10138679cdf37b01b390cd27963f195153413c6a9351c1b89e04721588"
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"summary.json": {
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"size": 10354,
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"sha256": "a7689e8daf1af46fd089800a8c7e40acc046c83335650ade3b93e49c1a368e6c"
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},
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"completion.json": {
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"size": 1053,
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"sha256": "ac3dd2f1a8677ae8086aa7ed25ff1e22b30b67b893bfafbe19b9525530925fb2"
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}
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}
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}
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/inputs/split-report.json
ADDED
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@@ -0,0 +1,66 @@
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{
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"status": "verified",
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"targets_sha256": "f6b98315720fe663ac282c665ebf79b3996ad038d8a6034da39c5dc7af24f727",
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"sequences": 106860,
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"clusters": 35543,
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"components": 22958,
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"largest_components": [
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{
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{
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{
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"counts": {
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| 30 |
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"test/complex": 128,
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| 31 |
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"test/dimer_hetero": 96,
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| 32 |
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| 33 |
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"test/long": 64,
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| 34 |
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"test/monomer_long": 64,
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| 35 |
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"test/monomer_medium": 64,
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| 36 |
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"test/monomer_short": 64,
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| 37 |
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"train/complex": 25504,
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| 38 |
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"train/dimer_hetero": 11300,
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| 39 |
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| 40 |
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| 41 |
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| 43 |
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"unused/complex": 3661,
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| 44 |
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| 45 |
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| 48 |
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| 49 |
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| 50 |
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"validation/complex": 64,
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| 51 |
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"validation/dimer_hetero": 48,
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| 52 |
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| 53 |
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| 54 |
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| 56 |
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| 57 |
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"train_targets": 475969,
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| 58 |
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"pilot_components_excluded_from_heldout": 1068,
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| 59 |
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"pilot_final_test_clusters_excluded_from_train": 146,
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| 60 |
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"mmseqs": {
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"seed": 20260917
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/records.json
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The diff for this file is too large to render.
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/request.json
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| 1 |
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{
|
| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 10 |
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| 11 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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| 31 |
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|
| 32 |
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| 33 |
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| 34 |
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| 35 |
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| 42 |
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| 45 |
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| 46 |
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| 50 |
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| 54 |
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| 62 |
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| 64 |
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| 65 |
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| 66 |
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| 72 |
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| 73 |
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| 74 |
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| 233 |
+
"atom_plddt_mae": 0.07567253805757539,
|
| 234 |
+
"calibration_error_10bin": 0.06220938337723783,
|
| 235 |
+
"plddt_ce": 3.6455606020987035,
|
| 236 |
+
"pae_ce": 3.3830326065421104,
|
| 237 |
+
"within_target_plddt_accuracy": 0.5,
|
| 238 |
+
"within_target_plddt_pairs": 10.0,
|
| 239 |
+
"within_target_iptm_dockq_accuracy": NaN,
|
| 240 |
+
"within_target_iptm_dockq_pairs": 0.0,
|
| 241 |
+
"top1_regret": 0.002634204924106598,
|
| 242 |
+
"random_selection_regret": 0.004188260808587074,
|
| 243 |
+
"complexes_without_dockq": 0.0,
|
| 244 |
+
"disorder_auroc": 0.9138184356288456,
|
| 245 |
+
"resolved_residue_mean_plddt": 0.9308164778295215,
|
| 246 |
+
"unresolved_residue_mean_plddt": 0.6999220839628937,
|
| 247 |
+
"resolved_fraction_below_50": 0.02394286788197707,
|
| 248 |
+
"unresolved_fraction_below_50": 0.13853427895981088,
|
| 249 |
+
"unresolved_residues": 8460.0
|
| 250 |
+
},
|
| 251 |
+
"monomer_short": {
|
| 252 |
+
"targets": 64.0,
|
| 253 |
+
"plddt_lddt_spearman": 0.545722614478657,
|
| 254 |
+
"ptm_tm_spearman": 0.6588261359974219,
|
| 255 |
+
"iptm_dockq_spearman": NaN,
|
| 256 |
+
"atom_plddt_mae": 0.0820638615461493,
|
| 257 |
+
"calibration_error_10bin": 0.035818639424759956,
|
| 258 |
+
"plddt_ce": 3.400894499570131,
|
| 259 |
+
"pae_ce": 2.850335083529353,
|
| 260 |
+
"within_target_plddt_accuracy": 0.7727272727272727,
|
| 261 |
+
"within_target_plddt_pairs": 66.0,
|
| 262 |
+
"within_target_iptm_dockq_accuracy": NaN,
|
| 263 |
+
"within_target_iptm_dockq_pairs": 0.0,
|
| 264 |
+
"top1_regret": 0.006337417755275965,
|
| 265 |
+
"random_selection_regret": 0.009589449688792225,
|
| 266 |
+
"complexes_without_dockq": 0.0,
|
| 267 |
+
"disorder_auroc": 0.8931626671097751,
|
| 268 |
+
"resolved_residue_mean_plddt": 0.891240306598452,
|
| 269 |
+
"unresolved_residue_mean_plddt": 0.6252325907117963,
|
| 270 |
+
"resolved_fraction_below_50": 0.030763848396501457,
|
| 271 |
+
"unresolved_fraction_below_50": 0.23108808290155441,
|
| 272 |
+
"unresolved_residues": 3860.0
|
| 273 |
+
}
|
| 274 |
+
}
|
| 275 |
+
}
|
| 276 |
+
}
|
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2/targets.json
ADDED
|
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|
|
|