Archive v2-reproduction-20260922 evaluate-esmfold2_300
Browse files- .gitattributes +1 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/completion.json +60 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/export.json +52 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/inputs/split-report.json +66 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/inputs/training-report.json +715 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/records.json +3 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/request.json +754 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/resume-history/attempt-2aa4d052d4a8412f919c08fb0ade6748.json +669 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/resume-history/dispatch-repair-1790175340580093400.json +18 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/resume.json +1316 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/skipped.json +1 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/summary.json +830 -0
- confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/targets.json +0 -0
.gitattributes
CHANGED
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_600/records.json filter=lfs diff=lfs merge=lfs -text
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_600/records.json filter=lfs diff=lfs merge=lfs -text
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/records.json filter=lfs diff=lfs merge=lfs -text
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/completion.json
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/export.json
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/inputs/split-report.json
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/inputs/training-report.json
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| 1 |
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{
|
| 2 |
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"status": "complete",
|
| 3 |
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|
| 4 |
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| 5 |
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| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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| 17 |
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},
|
| 18 |
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|
| 19 |
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|
| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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"wandb_url": "https://wandb.ai/lhallee/fastplms-confidence/runs/9558b6d23daf",
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| 32 |
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"config": {
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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| 38 |
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| 39 |
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| 40 |
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|
| 41 |
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| 42 |
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| 43 |
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| 44 |
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| 46 |
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| 48 |
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| 50 |
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| 51 |
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| 52 |
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| 53 |
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| 54 |
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"seed": 17
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| 55 |
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},
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| 56 |
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| 57 |
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| 58 |
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| 72 |
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| 73 |
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ADDED
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version https://git-lfs.github.com/spec/v1
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"sha256": "c746a5160bffb0679527843682db07cba041842ad9cde9af93a45d6d166b1737"
|
| 629 |
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|
| 630 |
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|
| 631 |
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"size": 2110,
|
| 632 |
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"sha256": "57a5be646cc29637b36732bf3927115a8f879cf0d91d82b26d5b850628ae86da"
|
| 633 |
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|
| 634 |
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"tools/confidence/workflow.py": {
|
| 635 |
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"size": 12886,
|
| 636 |
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"sha256": "abe8624dd5b980dcac43864e19649a4058bfed8fb8207d9014b0f50decadb1db"
|
| 637 |
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|
| 638 |
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"tools/execution/__init__.py": {
|
| 639 |
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|
| 640 |
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"sha256": "1aa67ededb225e478f19423c2e70deacfd00a4734d6116c8ccc6eafb4a6fd4f8"
|
| 641 |
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|
| 642 |
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|
| 643 |
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"size": 5146,
|
| 644 |
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"sha256": "7bde890c6dad647d23208460085f92b93d6f9e497a85b5cb0b6e1a5c33514534"
|
| 645 |
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|
| 646 |
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"tools/execution/pricing.py": {
|
| 647 |
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"size": 611,
|
| 648 |
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"sha256": "a1758c1a0df12cb08612c40167a9df87975abb2c170d227ccf775009dbfb3d80"
|
| 649 |
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|
| 650 |
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"tools/execution/source.py": {
|
| 651 |
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|
| 652 |
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"sha256": "2dd3694f5975f571db741084ac1d56b6dd693818ef323f013dae21e8bbde7339"
|
| 653 |
+
}
|
| 654 |
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|
| 655 |
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|
| 656 |
+
"python": "3.12.10",
|
| 657 |
+
"platform": "Linux-4.19.0-gvisor-x86_64-with-glibc2.36",
|
| 658 |
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|
| 659 |
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|
| 660 |
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|
| 661 |
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|
| 662 |
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|
| 663 |
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|
| 664 |
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|
| 665 |
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|
| 666 |
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|
| 667 |
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|
| 668 |
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|
| 669 |
+
}
|
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/resume-history/dispatch-repair-1790175340580093400.json
ADDED
|
@@ -0,0 +1,18 @@
|
|
|
|
|
|
|
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|
|
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|
|
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|
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|
| 1 |
+
{
|
| 2 |
+
"previous_dispatch": {
|
| 3 |
+
"previous_call_id": "fc-01M377QTNZRFQ4C4NCK6F0CB70",
|
| 4 |
+
"previous_call_status": "failed",
|
| 5 |
+
"prior_elapsed_seconds": 3600,
|
| 6 |
+
"remaining_seconds": 10800,
|
| 7 |
+
"deadline_unix": 1790185689.765543,
|
| 8 |
+
"gpu": "RTX-PRO-6000",
|
| 9 |
+
"retained_targets": 158,
|
| 10 |
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"requested_targets": 576,
|
| 11 |
+
"status": "dispatched",
|
| 12 |
+
"failed_controller_call_id": "fc-01M37BR91E9K1JQ7ARQ30BEW7Y",
|
| 13 |
+
"app_id": "ap-ZdFl7mTiKfj0YrR66NfGqo",
|
| 14 |
+
"call_id": "fc-01M37C1B05DWA0VK67XRQAJNV5"
|
| 15 |
+
},
|
| 16 |
+
"reason": "Verified modal_app.py differed only by CRLF normalization; restored exact original source bytes",
|
| 17 |
+
"failed_call_id": "fc-01M37C1B05DWA0VK67XRQAJNV5"
|
| 18 |
+
}
|
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/resume.json
ADDED
|
@@ -0,0 +1,1316 @@
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| 1 |
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confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/skipped.json
ADDED
|
@@ -0,0 +1 @@
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| 1 |
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|
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/summary.json
ADDED
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@@ -0,0 +1,830 @@
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|
| 1 |
+
{
|
| 2 |
+
"run": "v2",
|
| 3 |
+
"head_files": {
|
| 4 |
+
"v2": "/experiment/v2-reproduction-20260922/runs/esmfold2_300/v2/final-ema.safetensors",
|
| 5 |
+
"pilot": "/experiment/v2-reproduction-20260922/pilot/esmfold2_300-head.safetensors",
|
| 6 |
+
"donor": "None"
|
| 7 |
+
},
|
| 8 |
+
"v2": {
|
| 9 |
+
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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},
|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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],
|
| 37 |
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|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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|
| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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| 62 |
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|
| 63 |
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| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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],
|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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| 105 |
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|
| 106 |
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|
| 107 |
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| 108 |
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|
| 109 |
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|
| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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|
| 114 |
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|
| 115 |
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|
| 116 |
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|
| 117 |
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},
|
| 118 |
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|
| 119 |
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|
| 120 |
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|
| 121 |
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|
| 122 |
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| 123 |
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|
| 124 |
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|
| 125 |
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|
| 126 |
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|
| 127 |
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|
| 128 |
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|
| 129 |
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|
| 130 |
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|
| 131 |
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|
| 132 |
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|
| 133 |
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|
| 134 |
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| 135 |
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| 136 |
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| 139 |
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|
| 140 |
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|
| 141 |
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|
| 142 |
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| 143 |
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|
| 144 |
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|
| 147 |
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| 149 |
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| 150 |
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|
| 151 |
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|
| 152 |
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|
| 153 |
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|
| 154 |
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|
| 155 |
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|
| 156 |
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|
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| 163 |
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|
| 164 |
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|
| 165 |
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|
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| 798 |
+
"disorder_auroc": 0.5925183475039575,
|
| 799 |
+
"resolved_residue_mean_plddt": 0.33287747097606835,
|
| 800 |
+
"unresolved_residue_mean_plddt": 0.27279337037081697,
|
| 801 |
+
"resolved_fraction_below_50": 0.7631084382634843,
|
| 802 |
+
"unresolved_fraction_below_50": 0.8434988179669031,
|
| 803 |
+
"unresolved_residues": 8460.0
|
| 804 |
+
},
|
| 805 |
+
"monomer_short": {
|
| 806 |
+
"targets": 64.0,
|
| 807 |
+
"plddt_lddt_spearman": -0.43186688834851905,
|
| 808 |
+
"ptm_tm_spearman": -0.006176573989980371,
|
| 809 |
+
"iptm_dockq_spearman": NaN,
|
| 810 |
+
"atom_plddt_mae": 0.5644917836430194,
|
| 811 |
+
"calibration_error_10bin": 0.5510100045818213,
|
| 812 |
+
"plddt_ce": 7.134245243668556,
|
| 813 |
+
"pae_ce": 4.266933511197567,
|
| 814 |
+
"within_target_plddt_accuracy": 0.3770491803278688,
|
| 815 |
+
"within_target_plddt_pairs": 61.0,
|
| 816 |
+
"within_target_iptm_dockq_accuracy": NaN,
|
| 817 |
+
"within_target_iptm_dockq_pairs": 0.0,
|
| 818 |
+
"top1_regret": 0.008903929963707924,
|
| 819 |
+
"random_selection_regret": 0.008176452666521072,
|
| 820 |
+
"complexes_without_dockq": 0.0,
|
| 821 |
+
"disorder_auroc": 0.40551685977129565,
|
| 822 |
+
"resolved_residue_mean_plddt": 0.299003767419487,
|
| 823 |
+
"unresolved_residue_mean_plddt": 0.3700430870212981,
|
| 824 |
+
"resolved_fraction_below_50": 0.7820874635568513,
|
| 825 |
+
"unresolved_fraction_below_50": 0.6476683937823834,
|
| 826 |
+
"unresolved_residues": 3860.0
|
| 827 |
+
}
|
| 828 |
+
}
|
| 829 |
+
}
|
| 830 |
+
}
|
confidence-v2/v2-reproduction-20260922/public/evaluation/esmfold2_300/targets.json
ADDED
|
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|
|
|