Publish evaluated ESMFold2 confidence heads and package verification evidence
Browse files
docs/evidence/confidence/esmfold2_300-v1-package.json
ADDED
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@@ -0,0 +1,110 @@
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| 1 |
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{
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| 2 |
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"package": {
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| 3 |
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"model_id": "esmfold2_300",
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| 4 |
+
"head_path": "/experiment/v2-reproduction-20260922/evaluation/v2-reproduction-20260922/esmfold2_300/checkpoints/v2.safetensors",
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| 5 |
+
"head_sha256": "40fd7f3d82fcefe8ad20ab2b32a37a68a84b54a527a4bce6eb9437bad2b77e31",
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| 6 |
+
"frozen_base": {
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| 7 |
+
"repo_id": "Synthyra/ESMFold2-300",
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| 8 |
+
"revision": "a38a62ae930d157484b331c2bf4241684573adba",
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| 9 |
+
"files": [
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| 10 |
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{
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| 11 |
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"path": "config.json",
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| 12 |
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"algorithm": "git-sha1",
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| 13 |
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"digest": "47ec20cf8b234c3b41d6f3ae1bdfe95d4eb4849e"
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| 14 |
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},
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| 15 |
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{
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| 16 |
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"path": "model.safetensors",
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| 17 |
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"algorithm": "sha256",
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| 18 |
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"digest": "44d6797c5efebf24753d502b40950e0874871c96ceea14f2d7f7e39cebac67fd"
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| 19 |
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}
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| 20 |
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]
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| 21 |
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},
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| 22 |
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"base_weight_sha256": "44d6797c5efebf24753d502b40950e0874871c96ceea14f2d7f7e39cebac67fd",
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| 23 |
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"evaluation_id": "v2-reproduction-20260922",
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| 24 |
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"evaluation_request_sha256": "be5fb9a4b65a0c2abfa040069ffd4344a9d220ef8e595711c4849a62401e281a",
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| 25 |
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"training_url": "https://wandb.ai/lhallee/fastplms-confidence/runs/9558b6d23daf",
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| 26 |
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"updates": 780,
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| 27 |
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"status": "prepared",
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| 28 |
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"artifact": "/experiment/v2-reproduction-20260922/release/v1/esmfold2_300/ESMFold2-300",
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| 29 |
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"weight_sha256": "bb2eaf6389e1d58f5117ca3173a5ee73d73548cda5c89f95f85c4a2280ad0e7e",
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| 30 |
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"config_sha256": "1e7ee15fef3e1909d1b159edd8a5929c9f700726e29b15aa5c2bc589c566988d",
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| 31 |
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"preserved_folding_tensors": 820,
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| 32 |
+
"embedded_head_identity": true,
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| 33 |
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"complete_artifact_compliance": false
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| 34 |
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},
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| 35 |
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"validation": {
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| 36 |
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"coordinate_equality": true,
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| 37 |
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"samples": [
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| 38 |
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1,
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| 39 |
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| 40 |
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],
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| 41 |
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"seed": 17,
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| 42 |
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"loops": 3,
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| 43 |
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"diffusion_steps": 15,
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| 44 |
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"dtype": "fp32 parameters, bf16 autocast",
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| 45 |
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"backend": "sdpa",
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| 46 |
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"confidence_shapes": {
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| 47 |
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"1": {
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| 48 |
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"plddt_per_atom": [
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| 49 |
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1,
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| 50 |
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896
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| 51 |
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],
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| 52 |
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"plddt": [
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| 53 |
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1,
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| 54 |
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112
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| 55 |
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],
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| 56 |
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"pae": [
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| 57 |
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1,
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| 58 |
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112,
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| 59 |
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112
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| 60 |
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],
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| 61 |
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"ptm": [
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| 62 |
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1
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| 63 |
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],
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| 64 |
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"iptm": [
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| 65 |
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1
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| 66 |
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]
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| 67 |
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},
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| 68 |
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"2": {
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| 69 |
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"plddt_per_atom": [
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| 70 |
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2,
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| 71 |
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896
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| 72 |
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],
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| 73 |
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"plddt": [
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| 74 |
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2,
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| 75 |
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112
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| 76 |
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],
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| 77 |
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"pae": [
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| 78 |
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2,
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| 79 |
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112,
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| 80 |
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112
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| 81 |
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],
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| 82 |
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"ptm": [
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| 83 |
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2
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| 84 |
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],
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| 85 |
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"iptm": [
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| 86 |
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2
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| 87 |
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]
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| 88 |
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}
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| 89 |
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},
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| 90 |
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"cif_atom_count": 870,
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| 91 |
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"cif_chain_ids": [
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| 92 |
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"A",
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| 93 |
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"B"
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| 94 |
+
],
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| 95 |
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"peak_memory_bytes": 1758192128,
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| 96 |
+
"gpu": "NVIDIA RTX PRO 6000 Blackwell Server Edition",
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| 97 |
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"torch_version": "2.13.0+cu132",
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| 98 |
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"status": "passed",
|
| 99 |
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"head_sha256": "40fd7f3d82fcefe8ad20ab2b32a37a68a84b54a527a4bce6eb9437bad2b77e31",
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| 100 |
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"weight_sha256": "bb2eaf6389e1d58f5117ca3173a5ee73d73548cda5c89f95f85c4a2280ad0e7e",
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| 101 |
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"checks": {
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| 102 |
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"strict_reload": true,
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| 103 |
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"embedded_head_identity": true,
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| 104 |
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"confidence_default_enabled": true,
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| 105 |
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"confidence_ranges": true,
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| 106 |
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"seeded_coordinate_equality": true,
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| 107 |
+
"cif_confidence": true
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| 108 |
+
}
|
| 109 |
+
}
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| 110 |
+
}
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docs/evidence/confidence/esmfold2_300-v1.json
ADDED
|
@@ -0,0 +1,2021 @@
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|
| 1 |
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|
| 2 |
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| 3 |
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| 4 |
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| 7 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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| 14 |
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| 16 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 23 |
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| 24 |
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| 25 |
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"public/evaluation/esmfold2/completion.json",
|
| 1986 |
+
"public/evaluation/esmfold2/export.json",
|
| 1987 |
+
"public/evaluation/esmfold2/inputs/split-report.json",
|
| 1988 |
+
"public/evaluation/esmfold2/records.json",
|
| 1989 |
+
"public/evaluation/esmfold2/request.json",
|
| 1990 |
+
"public/evaluation/esmfold2/skipped.json",
|
| 1991 |
+
"public/evaluation/esmfold2/summary.json",
|
| 1992 |
+
"public/evaluation/esmfold2/targets.json"
|
| 1993 |
+
]
|
| 1994 |
+
},
|
| 1995 |
+
"acceptance": {
|
| 1996 |
+
"repo_id": "Synthyra/FastPLMs-artifacts",
|
| 1997 |
+
"revision": "a28efcdbeb48d4901cf2361826f2cb63f45e478f",
|
| 1998 |
+
"files": [
|
| 1999 |
+
"evaluation/v2-reproduction-20260922/acceptance-esmfold2_300.json",
|
| 2000 |
+
"evaluation/v2-reproduction-20260922/acceptance-esmfold2_600.json"
|
| 2001 |
+
]
|
| 2002 |
+
}
|
| 2003 |
+
},
|
| 2004 |
+
"input_files": {
|
| 2005 |
+
"acceptance": {
|
| 2006 |
+
"size": 27833,
|
| 2007 |
+
"sha256": "93a972ad9de1210b86e5fe1ff0228fd6698707c1447a48707ef9a18a29fbec98"
|
| 2008 |
+
},
|
| 2009 |
+
"esmfold2_600": {
|
| 2010 |
+
"size": 1509,
|
| 2011 |
+
"sha256": "cd2c239d350d3e1b12421089fcaf6260a062f58eba5eca144fff511f35d2c907"
|
| 2012 |
+
},
|
| 2013 |
+
"esmfold2": {
|
| 2014 |
+
"size": 1053,
|
| 2015 |
+
"sha256": "ac3dd2f1a8677ae8086aa7ed25ff1e22b30b67b893bfafbe19b9525530925fb2"
|
| 2016 |
+
}
|
| 2017 |
+
}
|
| 2018 |
+
}
|