| { | |
| "batch_size": 16384, | |
| "chain_scan": { | |
| "assembly_membership_edges_seen": 1105293, | |
| "asymmetric_unit_membership_edges_seen": 1037226, | |
| "chains_excluded_contains_x": 24118, | |
| "chains_excluded_too_short": 13084, | |
| "chains_excluded_total": 32222, | |
| "chains_retained": 1037226, | |
| "chains_scanned": 1069448 | |
| }, | |
| "chain_write": { | |
| "file_counts": { | |
| "test": 1, | |
| "train": 21, | |
| "valid": 1 | |
| }, | |
| "row_counts": { | |
| "test": 302, | |
| "train": 1036622, | |
| "valid": 302 | |
| } | |
| }, | |
| "complex_edge_scan": { | |
| "complex_member_edges_seen": 642454, | |
| "complexes_dropped_by_filtered_member": 18838, | |
| "complexes_scanned_for_edges": 344745, | |
| "source_complex_rows_seen": 363583 | |
| }, | |
| "complex_write": { | |
| "complexes_dropped_by_filtered_member": 18838, | |
| "file_counts": { | |
| "test": 1, | |
| "train": 7, | |
| "valid": 1 | |
| }, | |
| "member_chain_rows": 987199, | |
| "member_fields": { | |
| "asymmetric_unit_chain_uids": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 923757 | |
| }, | |
| "chain_uid": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 921450 | |
| }, | |
| "sequence_clusters_30": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 41718 | |
| }, | |
| "sequence_hashes": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 166930 | |
| }, | |
| "sequences": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 166930 | |
| }, | |
| "split_components": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 6019 | |
| }, | |
| "structure_clusters": { | |
| "crossing_values": 0, | |
| "max_pairwise_overlap": 0, | |
| "unique_values": 44485 | |
| } | |
| }, | |
| "row_counts": { | |
| "test": 301, | |
| "train": 344140, | |
| "valid": 304 | |
| } | |
| }, | |
| "component_stats": { | |
| "split_component_count": 6033, | |
| "test_component_count": 302, | |
| "train_component_count": 5429, | |
| "valid_component_count": 302 | |
| }, | |
| "cpu_count": 32, | |
| "dropped_complex_membership_keys": 18838, | |
| "elapsed_seconds": 77.882, | |
| "exclude_sequences_with_x": true, | |
| "filtered_chain_rows": 32222, | |
| "filtered_complex_rows": 18838, | |
| "foldseek_path": "", | |
| "include_source_split_component_edges": true, | |
| "max_rows_per_shard": 50000, | |
| "min_sequence_length": 10, | |
| "mmseqs_path": "", | |
| "nvidia-smi_path": "C:\\Windows\\system32\\nvidia-smi.EXE", | |
| "nvidia-smi_version": "Mon Jul 6 14:22:11 2026 \n+-----------------------------------------------------------------------------------------+\n| NVIDIA-SMI 580.88 Driver Version: 580.88 CUDA Version: 13.0 |\n+-----------------------------------------+------------------------+----------------------+\n| GPU Name Driver-Model | Bus-Id Disp.A | Volatile Uncorr. ECC |\n| Fan Temp Perf Pwr:Usage/Cap | Memory-Usage | GPU-Util Compute M. |\n| | | MIG M. |\n|=========================================+========================+======================|\n| 0 NVIDIA GeForce RTX 4070 ... WDDM | 00000000:01:00.0 On | N/A |\n| N/A 43C P5 8W / 123W | 866MiB / 8188MiB | 26% Default |\n| | | N/A |\n+-----------------------------------------+------------------------+----------------------+\n\n+-----------------------------------------------------------------------------------------+\n| Processes: |\n| GPU GI CI PID Type Process name GPU Memory |\n| ID ID Usage |\n|=========================================================================================|\n| 0 N/A N/A 6516 C+G ...p\\app-3.6.2\\GitHubDesktop.exe N/A |\n| 0 N/A N/A 8844 C+G ...indows\\System32\\ShellHost.exe N/A |\n| 0 N/A N/A 10456 C+G ..._cw5n1h2txyewy\\SearchHost.exe N/A |\n| 0 N/A N/A 13212 C+G ...5n1h2txyewy\\TextInputHost.exe N/A |\n| 0 N/A N/A 21252 C+G ...__2p2nqsd0c76g0\\app\\Codex.exe N/A |\n| 0 N/A N/A 36048 C+G ...Chrome\\Application\\chrome.exe N/A |\n| 0 N/A N/A 41088 C+G ...ntrolPanel\\SystemSettings.exe N/A |\n| 0 N/A N/A 63696 C+G ...8bbwe\\PhoneExperienceHost.exe N/A |\n| 0 N/A N/A 72372 C+G ...y\\StartMenuExperienceHost.exe N/A |\n| 0 N/A N/A 84244 C+G ...xyewy\\ShellExperienceHost.exe N/A |\n| 0 N/A N/A 104536 C+G C:\\Windows\\explorer.exe N/A |\n| 0 N/A N/A 152648 C+G ....0.4022.80\\msedgewebview2.exe N/A |\n| 0 N/A N/A 152984 C+G ...e Experience\\NVIDIA Share.exe N/A |\n| 0 N/A N/A 155976 C+G ...em32\\ApplicationFrameHost.exe N/A |\n| 0 N/A N/A 196292 C+G ...Chrome\\Application\\chrome.exe N/A |\n| 0 N/A N/A 206536 C+G ...2txyewy\\CrossDeviceResume.exe N/A |\n| 0 N/A N/A 221536 C+G ...Files\\Notepad++\\notepad++.exe N/A |\n+-----------------------------------------------------------------------------------------+", | |
| "platform": "Windows-11-10.0.26200-SP0", | |
| "python": "3.12.13", | |
| "quality_filter": { | |
| "drop_complexes_with_filtered_members": true, | |
| "exclude_sequences_with_x": true, | |
| "min_sequence_length": 10 | |
| }, | |
| "retained_chain_rows": 1037226, | |
| "retained_complex_rows": 344745, | |
| "seed": 42, | |
| "sequence_verification_max_unknown_fraction": 0.0, | |
| "source_chain_rows": 1069448, | |
| "source_complex_rows": 363583, | |
| "source_repo_id": "Synthyra/PDB-Chain-Complex-Benchmark", | |
| "source_snapshot_dir": "C:\\tmp\\hf_pdb_chain_complex_cache\\datasets--Synthyra--PDB-Chain-Complex-Benchmark\\snapshots\\3eb55ee7289dfedfbddf0cde48b68c5395783ccf", | |
| "target_repo_id": "Synthyra/PDB-Chain-Complex-Benchmark-Rigor", | |
| "test_frac": 0.05, | |
| "valid_frac": 0.05 | |
| } |