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ProtHGT

Commit History

  1. formatting updates to about and user guide pages

    ervau
    c9b4449

  2. add knowledge graph visualization section to user guide

    ervau
    dcc278b

  3. fix: replace gdown with hf_hub_download for dataset file retrieval

    ervau
    3e35a58

  4. quick fix: update gdown flags

    ervau
    Verified signature
    580fffd

  1. Update README.md

    ervau
    Verified signature
    bae5c9f

  2. Update README.md

    ervau
    Verified signature
    7396516

  1. potential fix for torch import error

    Erva Ulusoy
    89a4f79

  2. fix env building error

    Erva Ulusoy
    589e75e

  3. fix to avoid overwriting graph edges during inference + add prediction generation threshold

    Erva Ulusoy
    23f3d8f

  1. updated info message on visualization page

    Erva Ulusoy
    cdefd25

  2. added filtering options for second-degree edge visualization

    Erva Ulusoy
    a1e2231

  3. include second degree edges (major update)

    Erva Ulusoy
    14c3500

  4. color the edge and node titles based on type

    Erva Ulusoy
    85b27f1

  5. updated labels of edge colors in legend

    Erva Ulusoy
    b42cc3c

  6. edge title fix

    Erva Ulusoy
    297cd76

  1. updated node titles to contain node name instead of id

    Erva Ulusoy
    e0fbc94

  2. updated node name info file to include node types other than protein and go

    Erva Ulusoy
    9fb2870

  3. updated embedded node information

    Erva Ulusoy
    5cb58d3

  4. updated legend layout

    Erva Ulusoy
    31935f9

  5. added legend for kg visualization

    Erva Ulusoy
    f465b10

  6. updated edge coloring, modified edge labels to more clear ones

    Erva Ulusoy
    67e78f6

  7. added coloring to predicted/ground truth go term edges

    Erva Ulusoy
    51641fb

  1. added kg visualization feature

    Erva Ulusoy
    8f4b741

  1. color generate predictions button red

    ervau
    dbed3d3

  2. adjust generate predictions button placement

    ervau
    9e796bc

  1. changed workflow pdf to png it was not working

    Erva Ulusoy
    1d133b0

  2. delete availanle_proteins.txt as it is no longer necessary

    Erva Ulusoy
    0d1479e

  3. Update User_Guide.py

    Erva Ulusoy
    3f53680

  4. added hyperlinks to uniprot and go ids

    Erva Ulusoy
    9a145bd

  5. included protein and go term names in the result df

    Erva Ulusoy
    988f84d

  1. enable sidebar fix

    Erva Ulusoy
    42e2260

  2. update ProtHGT_app.py

    Erva Ulusoy
    b2ca546

  3. fix sidebar enable/disable

    Erva Ulusoy
    8b87470

  4. enable sidebar after predictions are made

    Erva Ulusoy
    e021e3c

  5. show selected proteins when using example query

    ervau
    e8c701e

  6. make multiselect box scrollable and discard view selected proteins container to only keep download button

    ervau
    eb75910

  7. better explain search process

    ervau
    2643ed2

  8. explain the usage of search proteins menu

    Erva Ulusoy
    25123c8

  9. removed redundant button

    Erva Ulusoy
    1e273b2

  10. new function to disable sidebar when generating predictions

    Erva Ulusoy
    fb8112c

  11. when generating predictions disable the sidebar

    Erva Ulusoy
    abddf21

  12. Update ProtHGT_app.py

    Erva Ulusoy
    95173ca

  13. make protein id search matching case insensitive

    Erva Ulusoy
    fcbba9e

  14. fix example proteins bug

    Erva Ulusoy
    a38fdcd

  15. make random choice of example proteins constant for each session

    Erva Ulusoy
    210eeb2

  16. disable generate predictions button when there are no new inputs

    Erva Ulusoy
    0ee926e

  17. discard the manual reset button

    Erva Ulusoy
    2f8d670

  1. removed unnecessary code snippet

    ervau
    94db867

  1. added example query option

    Erva Ulusoy
    7419d2a

  2. added fuzzy search feature

    Erva Ulusoy
    da1c3d0