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train · 848k rows

tax_id int64 7 3.42M	name_txt large_stringlengths 5 74	name_class large_stringclasses 2 values	short_genus large_stringlengths 4 66
7	Azorhizobium caulinodans	scientific name	A. caulinodans
9	Buchnera aphidicola	scientific name	B. aphidicola
11	Cellulomonas gilvus	scientific name	C. gilvus
11	Cellvibrio gilvus	synonym	C. gilvus
14	Dictyoglomus thermophilum	scientific name	D. thermophilum
17	Methylomonas clara	synonym	M. clara
17	Methylophilus methylotrophus	scientific name	M. methylotrophus
17	Methylotrophus methylophilus	synonym	M. methylophilus
19	Pelobacter carbinolicus	synonym	P. carbinolicus
19	Syntrophotalea carbinolica	scientific name	S. carbinolica
21	Phenylobacterium immobile	scientific name	P. immobile
23	Alteromonas colwelliana	synonym	A. colwelliana
23	Shewanella affinis	synonym	S. affinis
23	Shewanella colwelliana	scientific name	S. colwelliana
24	Alteromonas putrefaciens	synonym	A. putrefaciens
24	Pseudomonas putrefaciens	synonym	P. putrefaciens
24	Shewanella putrefaciens	scientific name	S. putrefaciens
25	Alteromonas hanedai	synonym	A. hanedai
25	Shewanella hanedai	scientific name	S. hanedai
33	Micrococcus fulvus	synonym	M. fulvus
33	Myxococcus fulvus	scientific name	M. fulvus
34	Myxococcus xanthus	scientific name	M. xanthus
35	Chondrococcus macrosporus	synonym	C. macrosporus
35	Corallococcus macrosporus	scientific name	C. macrosporus
35	Myxococcus macrosporus	synonym	M. macrosporus
38	Angiococcus disciformis	synonym	A. disciformis
38	Archangium disciforme	scientific name	A. disciforme
38	Cystobacter disciformis	synonym	C. disciformis
38	Myxococcus disciformis	synonym	M. disciformis
41	Chondromyces aurantiacus	synonym	C. aurantiacus
41	Stigmatella aurantiaca	scientific name	S. aurantiaca
43	Cystobacter fuscus	scientific name	C. fuscus
43	Polyangium fuscum	synonym	P. fuscum
45	Chondromyces gracilipes	synonym	C. gracilipes
45	Chondromyces lichenicolus	synonym	C. lichenicolus
45	Chondromyces minor	synonym	C. minor
45	Melittangium lichenicola	scientific name	M. lichenicola
45	Podangium gracilipes	synonym	P. gracilipes
45	Podangium lichenicolum	synonym	P. lichenicolum
48	Archangium gephyra	scientific name	A. gephyra
48	Chondrococcus cerebriformis	synonym	C. cerebriformis
48	Chondromyces serpens	synonym	C. serpens
48	Myxococcus cerebriformis	synonym	M. cerebriformis
51	Chondromyces apiculatus	scientific name	C. apiculatus
52	Chondromyces crocatus	scientific name	C. crocatus
52	Myxobotrys variabilis	synonym	M. variabilis
54	Nannocystis exedens	scientific name	N. exedens
56	Polyangium cellulosum	synonym	P. cellulosum
56	Polyangium compositum	synonym	P. compositum
56	Sorangium cellulosum	scientific name	S. cellulosum
56	Sorangium compositum	synonym	S. compositum
56	Sorangium nigrescens	synonym	S. nigrescens
56	Sorangium nigrum	synonym	S. nigrum
61	Vitreoscilla stercoraria	scientific name	V. stercoraria
62	Vitreoscilla beggiatoides	scientific name	V. beggiatoides
63	Vitreoscilla filiformis	scientific name	V. filiformis
65	Herpetosiphon aurantiacus	scientific name	H. aurantiacus
69	Lysobacter enzymogenes	scientific name	L. enzymogenes
72	Caryophanon muelleri	synonym	C. muelleri
72	Simonsiella muelleri	scientific name	S. muelleri
83	Hyphomicrobium vulgare	scientific name	H. vulgare
84	Hyphomicrobium methylovorum	scientific name	H. methylovorum
86	Hyphomonas jannaschiana	scientific name	H. jannaschiana
89	Leptothrix crassa	synonym	L. crassa
89	Leptothrix discophora	scientific name	L. discophora
89	Megalothrix discophora	synonym	M. discophora
94	Stella humosa	scientific name	S. humosa
97	Chlamydothrix ferruginea	synonym	C. ferruginea
97	Gallionella ferruginea	scientific name	G. ferruginea
97	Spirillum ferrugineum	synonym	S. ferrugineum
97	Spirophyllum ferrugineum	synonym	S. ferrugineum
100	Ancylobacter aquaticus	scientific name	A. aquaticus
100	Microcyclus aquaticus	synonym	M. aquaticus
102	Flectobacillus glomeratus	synonym	F. glomeratus
102	Polaribacter glomeratus	scientific name	P. glomeratus
103	Flectobacillus major	scientific name	F. major
103	Microcyclus major	synonym	M. major
104	Cyclobacterium marinum	scientific name	C. marinum
104	Cyclobacterium marinus	synonym	C. marinus
104	Flectobacillus marinus	synonym	F. marinus
104	Microcyclus marinus	synonym	M. marinus
106	Runella slithyformis	scientific name	R. slithyformis
108	Spirosoma linguale	scientific name	S. linguale
110	Blastobacter viscosus	synonym	B. viscosus
110	Xanthobacter viscosus	scientific name	X. viscosus
114	Gemmata obscuriglobus	scientific name	G. obscuriglobus
119	Planctomyces brasiliensis	synonym	P. brasiliensis
119	Rubinisphaera brasiliensis	scientific name	R. brasiliensis
120	Planctomyces limnophilus	synonym	P. limnophilus
120	Planctopirus limnophila	scientific name	P. limnophila
120	Planctopirus limnophilus	synonym	P. limnophilus
122	Gimesia maris	scientific name	G. maris
124	Blastopirellula marina	scientific name	B. marina
124	Pirellula marina	synonym	P. marina
125	Pirellula staleyi	scientific name	P. staleyi
128	Isocystis pallida	synonym	I. pallida
128	Isosphaera pallida	scientific name	I. pallida
128	Torulopsidosira pallida	synonym	T. pallida
132	Tuberoidobacter mutans	scientific name	T. mutans
134	Methylocystis parvus	scientific name	M. parvus

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The code used to generate the dataset is available at https://github.com/ChemBioHTP/EnzyExtract/blob/main/enzyextract/thesaurus/organism/ncbi_taxonomy.py.

The data comes from NCBI; see https://ftp.ncbi.nih.gov/pub/taxonomy/.

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Size of the auto-converted Parquet files:

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Number of rows:

847,572